PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36465.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 268aa    MW: 30094.2 Da    PI: 10.0047
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36465.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.36.4e-122670147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     r +WT+ E++++ +a++++  + Wk+I + +g  ++  q++s+ qky
       KZV36465.1 26 RESWTEPEHDKFMEAIQLFDRD-WKKIEAFIG-SKSVIQIRSHAQKY 70
                     789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-152076IPR009057Homeodomain-like
PROSITE profilePS5129413.4242175IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.9E-62272IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-172473IPR006447Myb domain, plants
SMARTSM007171.2E-82573IPR001005SANT/Myb domain
PfamPF002499.4E-102670IPR001005SANT/Myb domain
CDDcd001675.40E-72871No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MASSTTLPQE EPNRKVRKQY TISKTRESWT EPEHDKFMEA IQLFDRDWKK IEAFIGSKSV  60
IQIRSHAQKY FLKIQKSGIK EHLPPPRPKR KAAHPYPQKA SKIAVGLRPI SSLQASHVVP  120
DTGSVSRPDS LASLRHSDSA PSLPSLIKNS VKKGDVQSGG QSVPGIYCYC GNDNSPRARS  180
TVLPDFAQVY RFIGSVFDPS VTGHLQKLKK MDQIDIETVL LLMRNLSVNL SGPDFEDHRR  240
LLSAYEVDQT DNAYNTAKYI RDQFGESA
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36465.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076102.11e-120protein REVEILLE 6 isoform X3
SwissprotQ8H0W37e-92RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A2Z7BWN40.0A0A2Z7BWN4_9LAMI; Protein REVEILLE 6
STRINGMigut.F00285.1.p1e-114(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.24e-80MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]