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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KZV36470.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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| Family | GRAS | ||||||||
| Protein Properties | Length: 613aa MW: 67418.6 Da PI: 8.1077 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 313.6 | 4.5e-96 | 245 | 612 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
+ Lle+A a+s+++ a++l +rl++l++++g++ qRlaay++ A+++r + lpp + se +e+ a++l+++v P+++ ++++aNqa
KZV36470.1 245 RCLLEAAVAISERKPDIASELFSRLQHLSNERGTSEQRLAAYMVSAMKSRASP------LELPPPPVSELYGKEHYVATQLLYDVLPCFRHGFMAANQA 337
679*************************************************9......568888888888**************************** PP
GRAS 102 Ileavege..ervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
Il ++++ +++H++Dfdi++GlQ++ L++aLa+ +++ +l+iT++ +++ +e+l+ +g+rL+++A+e gv f++++ + ++dl+ e+L+
KZV36470.1 338 ILTSASERgfSKIHVVDFDIGHGLQYVHLIHALAANIshgKPSSMLKITTFTDSS--AAEKLKDVGDRLKNLANEKGVCFSIRI-KNSGTKDLSRESLE 433
****9988789***********************87765455569********55..9*************************9.999*********** PP
GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
v+++EalaVn+++ l r++desvs++++rd++L+ vk +sP v+++veqe+++n++++++r+ ea+++y al++sl+a+++re+ +E+ l +
KZV36470.1 434 VQSDEALAVNFAFTLCRIPDESVSTDNQRDDLLRRVKMMSPAVMTIVEQEMNTNTAPLVARVREACDHYGALLESLDATVSREDPRWLRIEQG-LCLRM 531
*********************************************************************************************.78889 PP
GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
+n vaceg++r+er+e ++kWr+rl+++GFk p s+ ++++ ++ l+ + g++v+eesg + +gW++r+++++SaW
KZV36470.1 532 KNSVACEGRDRVERCEVFGKWRARLGMSGFKIRPASQPVVDSLRSKLHYETggNPGFTVNEESGGVSFGWMGRTITVASAW 612
*******************************************999886554799************************** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 43.668 | 217 | 591 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 1.5E-93 | 245 | 612 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 613 aa Download sequence Send to blast |
MSSGFLPDLF TAGRRSAVVP TNMKLQQQGS LSSPVAGNPA DPTARILARR GADTIPMGKR 60 SLTEFQQQQN FLQQQQGLEF YLRNVKPRHG NYQHAPTISN PSTVALPQVS NSLMNNVNSR 120 YGLTIIKQQR PQSLILSNTG DVSTGVFLPN LISNKASVDS IQGPDFSARE SEKMILDLKL 180 QELEKRLLGD EDDAEEVSTV TTTELSETML NLINPARKPL SPSPTSSSSS CSSTAASPLL 240 TCPKRCLLEA AVAISERKPD IASELFSRLQ HLSNERGTSE QRLAAYMVSA MKSRASPLEL 300 PPPPVSELYG KEHYVATQLL YDVLPCFRHG FMAANQAILT SASERGFSKI HVVDFDIGHG 360 LQYVHLIHAL AANISHGKPS SMLKITTFTD SSAAEKLKDV GDRLKNLANE KGVCFSIRIK 420 NSGTKDLSRE SLEVQSDEAL AVNFAFTLCR IPDESVSTDN QRDDLLRRVK MMSPAVMTIV 480 EQEMNTNTAP LVARVREACD HYGALLESLD ATVSREDPRW LRIEQGLCLR MKNSVACEGR 540 DRVERCEVFG KWRARLGMSG FKIRPASQPV VDSLRSKLHY ETGGNPGFTV NEESGGVSFG 600 WMGRTITVAS AWY |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 3e-32 | 259 | 612 | 19 | 374 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KZV36470.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011076123.1 | 0.0 | scarecrow-like protein 8 | ||||
| TrEMBL | A0A2Z7BW97 | 0.0 | A0A2Z7BW97_9LAMI; Scarecrow-like protein 8-like | ||||
| STRING | Migut.F01094.1.p | 0.0 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA4023 | 24 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52510.1 | 1e-112 | SCARECROW-like 8 | ||||




