PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV36495.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 64aa    MW: 7116.42 Da    PI: 10.4833
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV36495.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.8e-28957149
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                +ri+n+ nrqvtf kR++g+lKKA+ELSvLCd eva+iifss+gkl+ +
  KZV36495.1  9 ERISNEVNRQVTFGKRKKGLLKKASELSVLCDSEVALIIFSSEGKLFHF 57
                69********************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.651161IPR002100Transcription factor, MADS-box
SMARTSM004327.0E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.66E-26261IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003191.5E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004042.7E-273859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MGRGKVILER ISNEVNRQVT FGKRKKGLLK KASELSVLCD SEVALIIFSS EGKLFHFGSV  60
GYML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A2e-21161161MEF2 CHIMERA
6bz1_B2e-21161161MEF2 CHIMERA
6bz1_C2e-21161161MEF2 CHIMERA
6bz1_D2e-21161161MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Forms a heterodimer via the K-box domain with AG, that could be involved in genes regulation during floral meristem development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV36495.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008439145.14e-26PREDICTED: MADS-box transcription factor 17-like
RefseqXP_011651126.13e-26PREDICTED: MADS-box transcription factor 6-like
RefseqXP_029119876.12e-26MADS-box transcription factor 6-like
SwissprotP293867e-26AGL6_ARATH; Agamous-like MADS-box protein AGL6
TrEMBLA0A2Z7BWR14e-37A0A2Z7BWR1_9LAMI; MADS-box transcription factor 17-like
STRINGXP_004150309.14e-26(Cucumis sativus)
STRINGXP_004167097.14e-26(Cucumis sativus)
STRINGORGLA02G0240800.11e-26(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45650.13e-28AGAMOUS-like 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Dreni L,Zhang D
    Flower development: the evolutionary history and functions of the AGL6 subfamily MADS-box genes.
    J. Exp. Bot., 2016. 67(6): p. 1625-38
    [PMID:26956504]