PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37212.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 356aa    MW: 39782.5 Da    PI: 6.9684
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37212.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH27.84.5e-09132153426
                 ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                 + C++f++ GtC++Gd+C +aHg
  KZV37212.1 132 SACPDFRK-GTCSRGDSCEYAHG 153
                 67******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902295.65E-5128157IPR000571Zinc finger, CCCH-type
SMARTSM003562.7E-5128154IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666129155IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-7132153IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-5133155IPR000571Zinc finger, CCCH-type
SMARTSM0035610163186IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MMIGDPPELN PTVQIPSWDY HHVEDPAAHI QSPTSHNVYP NSSDSFHYEN AFAALQRYLP  60
SNQDDAIEAG DEDPGDFEVP VDAFSCDDFR MFEFKVKKCT RAKPHDWTEC PFAHPGEKAR  120
RRDPRRFHYS GSACPDFRKG TCSRGDSCEY AHGVFECWLH PARYRTQPCK DGIHCRRRVC  180
FFAHTLEQLR VLPYTTSPDA SPSRLSHDPF VTLGLFGSSP NSTMYSPPLS PTTGSPSMSV  240
NQLTDSLQGL QINRMQVGIG LSMSPPTWKP GFKSPRSPSI IRPGFSSMSS TPIGAVNRSG  300
RVSFDAWEIS CEEGQAMERV ESGRKLREKL YAKLGKENSL ERVARVDFPG TGPDMG
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37212.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081722.10.0zinc finger CCCH domain-containing protein 23
SwissprotQ9M0G23e-96C3H49_ARATH; Zinc finger CCCH domain-containing protein 49
TrEMBLA0A2Z7BRG60.0A0A2Z7BRG6_9LAMI; Zinc finger CCCH domain-containing protein 23
STRINGMigut.A00165.1.p1e-163(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18572158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.18e-96C3H family protein
Publications ? help Back to Top
  1. Dokládal L, et al.
    cDNA Library Screening Identifies Protein Interactors Potentially Involved in Non-Telomeric Roles of Arabidopsis Telomerase.
    Front Plant Sci, 2015. 6: p. 985
    [PMID:26617625]
  2. Min JH, et al.
    Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element.
    Front Plant Sci, 2017. 8: p. 2100
    [PMID:29321786]