PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37312.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family AP2
Protein Properties Length: 653aa    MW: 71633.8 Da    PI: 7.039
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37312.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP235.23e-11256312155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  KZV37312.1 256 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 312
                 57*******************4444.2455535555.779999**************98 PP
2AP246.87.3e-15355406155
         AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  KZV37312.1 355 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 406
                 57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-8256312IPR001471AP2/ERF domain
CDDcd000182.58E-19256322No hitNo description
SuperFamilySSF541718.5E-15256322IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.107.6E-12257321IPR001471AP2/ERF domain
PROSITE profilePS5103217.319257320IPR001471AP2/ERF domain
SMARTSM003801.1E-22257326IPR001471AP2/ERF domain
PRINTSPR003676.5E-6258269IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-17355415IPR016177DNA-binding domain
PfamPF008479.1E-10355406IPR001471AP2/ERF domain
CDDcd000189.40E-25355416No hitNo description
Gene3DG3DSA:3.30.730.108.3E-18356414IPR001471AP2/ERF domain
PROSITE profilePS5103219.085356414IPR001471AP2/ERF domain
SMARTSM003801.9E-33356420IPR001471AP2/ERF domain
PRINTSPR003676.5E-6396416IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 653 aa     Download sequence    Send to blast
MGSMNNWLGF SLSPQQVVVS DQCFGLTQPS DSVTPPPFGI LEAFNTTNTA ASDPQPHDWN  60
MKGGAGMGSI ISCGSRSLEI QETPKLENFL GVGMHSFAVD HHRQQLKNPN VTNPTSYQTS  120
SSTLDNSYNI YQETDATSHK RINPTNDNTT TIGLSMIKNW LRNNPTPPNA LEIKAGTTAA  180
PPTATGAQTL SLSMSTCSQS SSHNLPLVNG GNNKINAAES CASDNNDKQP VDSQTSSGAI  240
ESVTRKNLDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQTRKGRQ GGYDKEEKAA  300
RAYDLAALKY WGTTTTTNFP ISNYEKEVEE MKHMTRQEYV ASLRRKSSGF SRGASIYRGV  360
TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGLSAV TNFEINRYDV  420
KSILESNTLP IGSAAKRLKD AENQEAALEI QWSEQGNCWP NNLANGYGWP TIGFQQAPPL  480
NMYGYANQSR MWCKQEQEQD LVTHGFIGNS NIRHQLQLGN VQNFSQSSHV LHNLMSLDSS  540
SMEHSTGSNS VMYGNNGDGN VTTGNSFMGP IMGAVIVGNG NENRENGFVA HGQGHLEGMF  600
GSTDVYPQTR NLYQSGGVAK ASAIYDEGSN CNNYIPSSLS NLGSSNFTVW NET
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00610ChIP-seqTransfer from AT5G17430Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37312.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011077145.10.0AP2-like ethylene-responsive transcription factor BBM2
SwissprotQ6PQQ41e-144BBM_ARATH; AP2-like ethylene-responsive transcription factor BBM
TrEMBLA0A2Z7BRQ90.0A0A2Z7BRQ9_9LAMI; Uncharacterized protein
STRINGEOY097220.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA70992131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G17430.11e-127AP2 family protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Horstman A, et al.
    AIL and HDG proteins act antagonistically to control cell proliferation.
    Development, 2015. 142(3): p. 454-64
    [PMID:25564655]
  4. Florez SL,Erwin RL,Maximova SN,Guiltinan MJ,Curtis WR
    Enhanced somatic embryogenesis in Theobroma cacao using the homologous BABY BOOM transcription factor.
    BMC Plant Biol., 2015. 15: p. 121
    [PMID:25976599]
  5. Lutz KA,Martin C,Khairzada S,Maliga P
    Steroid-inducible BABY BOOM system for development of fertile Arabidopsis thaliana plants after prolonged tissue culture.
    Plant Cell Rep., 2015. 34(10): p. 1849-56
    [PMID:26156330]
  6. Horstman A, et al.
    The BABY BOOM Transcription Factor Activates the LEC1-ABI3-FUS3-LEC2 Network to Induce Somatic Embryogenesis.
    Plant Physiol., 2017. 175(2): p. 848-857
    [PMID:28830937]
  7. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]
  8. Horstman A,Bemer M,Boutilier K
    A transcriptional view on somatic embryogenesis.
    Regeneration (Oxf), 2017. 4(4): p. 201-216
    [PMID:29299323]