PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37410.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 272aa    MW: 30370.3 Da    PI: 8.7504
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37410.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding41.43.3e-1362106147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      r +W+++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
       KZV37410.1  62 RESWSEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 106
                      789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-1556109IPR009057Homeodomain-like
PROSITE profilePS5129415.33357111IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-759115IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-1760109IPR006447Myb domain, plants
SMARTSM007176.8E-1161109IPR001005SANT/Myb domain
PfamPF002494.5E-1162106IPR001005SANT/Myb domain
CDDcd001672.70E-864107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MVSVYPNPSP SQDFTQFYGC YIGGDPMRTG ITAHFPESSS TSTGTEDPSK KIRKPYTITK  60
SRESWSEQEH DKFLEALQLF DRDWKKIEAF VGSKTVIQIR SHAQKYFQKV LKNGKSEHVP  120
PPRPKRKANH PYPQKAPKNA ISVTAGVAHS VTAGVVRSCA AISAQPNSLP VHSNPVGCVH  180
LSPWMETEHL SRVMPDFAQV YEFIGSVFDN SASDHLARLK KMDPINVQTV TTLMKNLAIN  240
LVSPEFEDHR RLLSSYQASA ETYDMGSATD FE
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011093085.11e-107protein REVEILLE 6 isoform X2
SwissprotQ6R0H03e-84RVE3_ARATH; Protein REVEILLE 3
TrEMBLA0A2Z7BYX00.0A0A2Z7BYX0_9LAMI; Protein REVEILLE 3
STRINGSolyc01g095030.2.12e-98(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9982478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01520.11e-86MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]
  4. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]