PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37416.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 350aa    MW: 38187.1 Da    PI: 6.8852
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37416.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.91.1e-10103127126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC+ f++ GtC+y  +C+FaH+
  KZV37416.1 103 YKTKLCCKFRA-GTCPYVTNCNFAHS 127
                 9**********.*************8 PP
2zf-CCCH17.47.9e-06174199126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 yk + C+ f+    C+yG++C+F H+
  KZV37416.1 174 YKGRHCKKFYTEEGCPYGENCTFLHD 199
                 78888********************7 PP
3zf-CCCH42.31.2e-13234259126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 +kt++C+ +  tG+C++G++C+FaHg
  KZV37416.1 234 WKTRICNKWELTGYCPFGSKCHFAHG 259
                 8************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.2E-899133IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-15100135IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.526102129IPR000571Zinc finger, CCCH-type
SMARTSM003560.0011102128IPR000571Zinc finger, CCCH-type
PfamPF006426.6E-8103127IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-7172201IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-9172201IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.986173201IPR000571Zinc finger, CCCH-type
SMARTSM003560.17173200IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.1E-17229263IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-10230264IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.422233261IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-9233260IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-11234259IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MDYHRENGFS GGNVVQILTG NSGNGVDENW SPGSTDPAIW ATEDEYGMWN GEASMDMNTS  60
LNYEGRSSQS RSGSEPPSKR SRNSQSVDVA ASSRSRAIGK MFYKTKLCCK FRAGTCPYVT  120
NCNFAHSIEE LRKPPPNWQE IVAGNDDERP VLSEPREEFQ IPIFGVSDDA QRSYKGRHCK  180
KFYTEEGCPY GENCTFLHDE QSKSRESVAI SLGPGSGGGY GGNGSGSNLK PSNWKTRICN  240
KWELTGYCPF GSKCHFAHGA AELHRYGGAS DAEAVDPSTP DVKHGTAPPK PSVDAAVATA  300
PSVPHSDVYH VGVPSQRLPA VIQKTGHRPT QKWKGPDKIS KIYGDWIDDL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37416.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011092357.10.0zinc finger CCCH domain-containing protein 12 isoform X2
SwissprotQ84UQ31e-117C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBLA0A2Z7BSY70.0A0A2Z7BSY7_9LAMI; Uncharacterized protein
STRINGMigut.N01445.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37292343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32360.11e-112C3H family protein