PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37444.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 222aa    MW: 24603 Da    PI: 10.0177
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37444.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.73.9e-20131180255
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  y+GVr+++ +g+W+AeIrdp+    + +r++lg+f t eeAa+a+++a+ +++g
  KZV37444.1 131 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFQTSEEAARAYDKAAIEFRG 180
                 59*******.**********94....36************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003808.0E-39131194IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-32131188IPR001471AP2/ERF domain
PfamPF008471.6E-14131180IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-22131189IPR016177DNA-binding domain
PROSITE profilePS5103225.264131188IPR001471AP2/ERF domain
CDDcd000181.76E-33131188No hitNo description
PRINTSPR003675.6E-12132143IPR001471AP2/ERF domain
PRINTSPR003675.6E-12154170IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 222 aa     Download sequence    Send to blast
MRQISRKSIQ QEKSVEIISQ MSYSLHVLEQ LRPPPPRMTA EEEAAVMVAA LRNVITGGDR  60
SAANPVQDFK IPSRFDQVSG FVAVPEYMET CRFCGINGCL GCHFFDGDEK KKKVGIKNIG  120
AGKKKVGAKK NYRGVRQRPW GKWAAEIRDP RKAARVWLGT FQTSEEAARA YDKAAIEFRG  180
PRAKLNFPFA DYTSTSASTS SAAPPAAVQE YVHCGVTENR SD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-23130189161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A1e-23130189464ATERF1
3gcc_A1e-23130189464ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37444.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011088263.17e-65ethylene-responsive transcription factor ERF109
SwissprotQ9SZ063e-35EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLA0A2Z7BST21e-165A0A2Z7BST2_9LAMI; Uncharacterized protein
STRINGMigut.B00347.1.p1e-54(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21241165
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33710.17e-31ERF family protein
Publications ? help Back to Top
  1. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  2. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  3. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  4. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  5. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]