PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37608.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 180aa    MW: 20381.3 Da    PI: 6.7869
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37608.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.69.8e-053456123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y+C+ C++ F++   L  H++ H
  KZV37608.1 34 YECNFCKRGFTNAQALGGHMNIH 56
                99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.0E-53260IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.48E-73261No hitNo description
PROSITE profilePS5015711.5933461IPR007087Zinc finger, C2H2
PROSITE patternPS0002803656IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MEPGKQKSPD TTSAENDTQP EKNNDENTGV GRSYECNFCK RGFTNAQALG GHMNIHRKDK  60
AKVAKQKNQE EPSKNTKPSE DHTSSRYATF AQMLPNDQKQ QRAQQHLNYQ VYLPSSNPSF  120
ESENYRSCVP FRCLESKEDG KKDENLSLRI GLPHGDEGVS KGKEEKNEQV DLELRLGHDP
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37608.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011091220.16e-55transcriptional regulator SUPERMAN
TrEMBLA0A2Z7BVD81e-132A0A2Z7BVD8_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21362152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.14e-17C2H2 family protein