PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37862.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 621aa    MW: 67732.9 Da    PI: 7.0443
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37862.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.62.4e-094314681954
                 HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 Fe   ++yp+ +++  LAk++gL+ +qV++WF N R +
  KZV37862.1 431 FEHflHPYPTDTDKLMLAKQTGLSRNQVSNWFINARVR 468
                 664459******************************88 PP
2BELL100.51.3e-32299368372
        BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                  e  +kk++Lls+l+eV+krYkqy++q+q+v +sFe vagl sa+p++slA ka+++hF+cLk+ai++q+
  KZV37862.1 299 SEQTRKKSRLLSMLDEVYKRYKQYYQQMQAVFASFESVAGLSSAAPFASLAIKAMAKHFKCLKNAIMDQL 368
                 57889**************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.7E-47234366IPR006563POX domain
PfamPF075261.1E-37239365IPR006563POX domain
PROSITE profilePS5007112.066409472IPR001356Homeobox domain
SMARTSM003898.7E-10412476IPR001356Homeobox domain
CDDcd000866.19E-13412473No hitNo description
SuperFamilySSF466894.06E-17414478IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.3E-27415476IPR009057Homeodomain-like
PfamPF059201.6E-18429468IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010076Biological Processmaintenance of floral meristem identity
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010089Biological Processxylem development
GO:0010154Biological Processfruit development
GO:0010223Biological Processsecondary shoot formation
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048457Biological Processfloral whorl morphogenesis
GO:0048645Biological Processorgan formation
GO:0080006Biological Processinternode patterning
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MAEGFEPYHV PQQSRRDKLR VNPQGCVDGH LLSCAPLVLP LYDPSLISAD LISCAAANLH  60
HRQGFDLGTS GASAGAKQEG MNLMGYVGGM NMISGSAAAA SSSSASTNHM LVDPQLSVQI  120
NPSNIQDING GPFVYPHINY RPVPDQSFHG NEMVVYAREL NSNCAAAASG QSLSLSLSSS  180
HNNNHNLPLE LNLQRYDSTM FANSKVSGAY FVAGNGGSSS TQLSRSSVPL GPFTGYASVL  240
KGSRFLKPAH QLLEELCDVG RGIFADKVAV DSSLLEPPLE SLSGNGVDDD SSLNCSDGSE  300
QTRKKSRLLS MLDEVYKRYK QYYQQMQAVF ASFESVAGLS SAAPFASLAI KAMAKHFKCL  360
KNAIMDQLHF SNKSQGRTNY EQVETQRFEN LGRGTYGQRP FHSSGFMDQP VWRPQRGLPE  420
RAVTILRAWL FEHFLHPYPT DTDKLMLAKQ TGLSRNQVSN WFINARVRLW KPMVEEIHTL  480
ETHQGQKASQ RDDHLPASCS IECEKTCSSV QRNGDFSLKR TRNDLTEAPT GVEGPMNLPF  540
NKLSHNPLLG VGMSNAGGSG DVSLTLGLHQ NGMGLSDSYP ITAARRFGLD AHGEEYVVGG  600
FTAHNRQMGG QLVHDFQESD H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrm_A1e-16418476563Homeobox protein Meis2
4xrm_B1e-16418476563Homeobox protein Meis2
4xrs_A8e-17418475158Homeobox protein Meis1
4xrs_B8e-17418475158Homeobox protein Meis1
5bng_A9e-17418476159Homeobox protein Meis2
5bng_B9e-17418476159Homeobox protein Meis2
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that is involved in the preservation of the spiral phyllotactic arrangement leading to a regular pattern of organ initiation. Required for maintenance of stem cell fate in the shoot apical meristem, and is essential for specifying floral primordia and establishing early internode patterning events during inflorescence development. Acts as transcription repressor of AG expression in floral and inflorescence meristems. Is also responsive of the nuclear import of SHOOT MERISTEMLESS (STM). In the fruit, plays a central role in patterning by negatively regulating SHP expression in order to prevent replum cells from adopting a valve margin cell fate. {ECO:0000269|PubMed:12874117, ECO:0000269|PubMed:12897247, ECO:0000269|PubMed:13678595, ECO:0000269|PubMed:15019989, ECO:0000269|PubMed:15120075, ECO:0000269|PubMed:15155890, ECO:0000269|PubMed:16741748}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37862.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010654234.10.0PREDICTED: BEL1-like homeodomain protein 9
SwissprotQ9LZM81e-104BLH9_ARATH; BEL1-like homeodomain protein 9
TrEMBLA0A2Z7BTB60.0A0A2Z7BTB6_9LAMI; Uncharacterized protein
STRINGVIT_08s0007g01290.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35202237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.13e-92TALE family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Pabón-Mora N,Wong GK,Ambrose BA
    Evolution of fruit development genes in flowering plants.
    Front Plant Sci, 2014. 5: p. 300
    [PMID:25018763]
  3. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]
  4. Andrés F, et al.
    Floral Induction in Arabidopsis by FLOWERING LOCUS T Requires Direct Repression of BLADE-ON-PETIOLE Genes by the Homeodomain Protein PENNYWISE.
    Plant Physiol., 2015. 169(3): p. 2187-99
    [PMID:26417007]
  5. Bencivenga S,Serrano-Mislata A,Bush M,Fox S,Sablowski R
    Control of Oriented Tissue Growth through Repression of Organ Boundary Genes Promotes Stem Morphogenesis.
    Dev. Cell, 2016. 39(2): p. 198-208
    [PMID:27666746]
  6. Sehra B,Franks RG
    Redundant CArG Box Cis-motif Activity Mediates SHATTERPROOF2 Transcriptional Regulation during Arabidopsis thaliana Gynoecium Development.
    Front Plant Sci, 2017. 8: p. 1712
    [PMID:29085379]
  7. Simonini S,Stephenson P,Østergaard L
    A molecular framework controlling style morphology in Brassicaceae.
    Development, 2018.
    [PMID:29440299]