PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV37872.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C2H2
Protein Properties Length: 192aa    MW: 21262.6 Da    PI: 5.1744
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV37872.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00063355123
                EEETTTTEEESSHHHHHHHHHHT CS
     zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                y C+ C++ Fs+   L  H++ H
  KZV37872.1 33 YGCTFCKRGFSNAQALGGHMNIH 55
                67*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.86E-73059No hitNo description
Gene3DG3DSA:3.30.160.601.5E-53059IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.993360IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MNLGPPKPKN SDQEIIRGDH GCLAKDIGRE KAYGCTFCKR GFSNAQALGG HMNIHRKDRA  60
RLKEFSGENL LSLEIKRTTS YCGDTSPSEL NSSTSHKPSF PGETDTKEYS CFPDKDEDSR  120
PVEEDPICDL PLFSEEPLVS EVGEKHGSLS FGEGHVEKLG SSRAVSHVEV DLELRLGPEP  180
DHDASIKREF IF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV37872.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7BTC51e-138A0A2Z7BTC5_9LAMI; Putative transcriptional regulator RABBIT EARS
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74631626
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.12e-14C2H2 family protein