PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38032.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 191aa    MW: 22096.5 Da    PI: 4.9382
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38032.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.61.8e-3451251128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkge 98 
                 +ppGfrFhPtdeelvv++L++k++  +++  ++i+++d++ ++PwdL+ k+ ae ++wyf+s++         ++r+t sgyW+  g  d++++s++g+
  KZV38032.1   5 MPPGFRFHPTDEELVVHFLHRKTKLLPCHP-DIIPDLDLHPYDPWDLNGKAMAEGSRWYFYSRKT--------QSRVTGSGYWQPFGAkDEHIYSSSGH 94 
                 79*************************999.99**************977778899*****9974........579********998648999**9*** PP

         NAM  99 lvglkktLvfykg.rapkgektdWvmheyrl 128
                  +g++k   fy g  +++g+kt+Wvm+e+rl
  KZV38032.1  95 IIGIRKHYEFYIGeLDSNGVKTNWVMQEFRL 125
                 ***********8846899***********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.18E-433156IPR003441NAC domain
PROSITE profilePS5100542.2645158IPR003441NAC domain
PfamPF023651.1E-226125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSFNMPPGFR FHPTDEELVV HFLHRKTKLL PCHPDIIPDL DLHPYDPWDL NGKAMAEGSR  60
WYFYSRKTQS RVTGSGYWQP FGAKDEHIYS SSGHIIGIRK HYEFYIGELD SNGVKTNWVM  120
QEFRLSDSSS SSTRSSRSRR NSNCVDHSKW VLCRVYEGEC DDDGDDDGIE LSCLDEVFLS  180
MDDFDEISLP N
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A1e-33215917169NAC domain-containing protein 19
3swm_B1e-33215917169NAC domain-containing protein 19
3swm_C1e-33215917169NAC domain-containing protein 19
3swm_D1e-33215917169NAC domain-containing protein 19
3swp_A1e-33215917169NAC domain-containing protein 19
3swp_B1e-33215917169NAC domain-containing protein 19
3swp_C1e-33215917169NAC domain-containing protein 19
3swp_D1e-33215917169NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38032.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028116302.12e-90NAC domain-containing protein 104-like
SwissprotQ8GWK66e-77NC104_ARATH; NAC domain-containing protein 104
TrEMBLA0A2Z7BTR31e-140A0A2Z7BTR3_9LAMI; Uncharacterized protein
STRINGXP_009622295.17e-83(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37662447
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.13e-66xylem NAC domain 1
Publications ? help Back to Top
  1. Zhao C, et al.
    XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED.
    New Phytol., 2017. 216(1): p. 76-89
    [PMID:28742236]
  2. Tang N, et al.
    Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis.
    Nat Commun, 2018. 9(1): p. 3884
    [PMID:30250259]