PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38268.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HB-other
Protein Properties Length: 339aa    MW: 37929.3 Da    PI: 6.5851
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38268.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox20.96.1e-0713532555
                --HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS
    Homeobox 25 psaeereeLAkkl..........gLterqVkvWFqNrRake 55
                ps+e  e +A++           +++ +qV +WFqNrR+  
  KZV38268.1 13 PSREILEAIAQRFsntaersgkvEVSAKQVWNWFQNRRYAL 53
                78888888888888888888888***************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.28156IPR001356Homeobox domain
SuperFamilySSF466891.33E-71155IPR009057Homeodomain-like
PfamPF000461.8E-41353IPR001356Homeobox domain
CDDcd000860.003221354No hitNo description
Gene3DG3DSA:1.10.10.604.3E-51359IPR009057Homeodomain-like
PfamPF167196.7E-41106233IPR032001SAWADEE domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDSILQAHGY TVPSREILEA IAQRFSNTAE RSGKVEVSAK QVWNWFQNRR YALRAKATKS  60
SPPEQVYVPP APRDDQAVAR NLPPTPQPQP VHSTQNSIRN ASDNSQMEFE AKSARDGAWY  120
DVASFLSHRS LETADPEVLV RFAGFGPEED EWVNIRRHVR QRSLPCESSE CVAVLPGDLT  180
LCFQEGKEQA LYFDAHVLDA QRRRHDVRGC RCRFLVRYDH DQAEEIVPLR KVCRRPETDY  240
RLQQLHTSSA NVNAQKIGLD LHVMNSTKIS IQDDTQKQPK TEEHVDGGIA IASPVIPATL  300
ESTLVPSNAI ETKTETVVNT NPSDAVAARA GSDMSVHQG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4iuq_A7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A7e-471042371134SHH1 SAWADEE
4iur_B7e-471042371134SHH1 SAWADEE
4iut_A7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B7e-471042371134SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38268.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098266.11e-156protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X1
RefseqXP_020554519.11e-156protein SAWADEE HOMEODOMAIN HOMOLOG 2 isoform X2
SwissprotQ8RWJ71e-119SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBLA0A2Z7BX940.0A0A2Z7BX94_9LAMI; Uncharacterized protein
STRINGMigut.M00766.1.p1e-151(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA88032124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18380.11e-108sequence-specific DNA binding transcription factors;sequence-specific DNA binding