PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38324.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 288aa    MW: 32561.3 Da    PI: 8.7399
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38324.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.31.3e-084367126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                ykt++C  f+  G C+ G+ C+FaHg
  KZV38324.1 43 YKTRICAKFMD-GMCRNGEHCTFAHG 67
                9**********.*************8 PP
2zf-CCCH26.61e-08102125225
                 -S---SGGGGTS--TTTTT-SS-S CS
     zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                 +t++C+ ++ +G+C+yG++C F H
  KZV38324.1 102 RTKICKKYYNGGECPYGEKCIFLH 125
                 699********************9 PP
3zf-CCCH30.65.6e-10183208127
                 --S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                 +kt+lC+ +   G+C+yG+rC +aHg+
  KZV38324.1 183 WKTKLCSKWEI-GQCPYGERCYYAHGQ 208
                 8**********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.103.9E-143974IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.13E-84073IPR000571Zinc finger, CCCH-type
SMARTSM003565.8E-44268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.6714269IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-54367IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-4100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.352100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.16E-8101127IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-6102125IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-9102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-14178212IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.85E-9182212IPR000571Zinc finger, CCCH-type
SMARTSM003562.0E-5182208IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.436182209IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-7183208IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MQPDSVSQYD RAPSFKRARN SENKPPVYQT NGTGSNGTSH IFYKTRICAK FMDGMCRNGE  60
HCTFAHGNED LRVPPPNWQD LVREKDRGAG SNWNDDQRII NRTKICKKYY NGGECPYGEK  120
CIFLHERAPS NYSAEVPWQR ESSAISIGTR RDPLWSSSDF NQPDSNKQVT GGLDTYQVRT  180
SFWKTKLCSK WEIGQCPYGE RCYYAHGQSD LKVSGSRVET EQIMNSGTAL AKSMVAPGNP  240
VVGSPLGEAG EDKKSSKWKL TRKINRIYAD WIDDLSPPYF SPNKKDDA
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38324.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078936.11e-116zinc finger CCCH domain-containing protein 39 isoform X1
TrEMBLA0A2Z7BVA20.0A0A2Z7BVA2_9LAMI; Zinc finger CCCH domain-containing protein 39-like
STRINGXP_009630795.11e-108(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA65532434
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.13e-65C3H family protein