PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38522.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family ERF
Protein Properties Length: 153aa    MW: 17228.3 Da    PI: 7.5998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38522.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.42.6e-161867255
         AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ykG+r +k +g+WvAeIr+p   +kr r++lg++ ++  Aa+a++ a  +l+g
  KZV38522.1 18 PYKGIRMRK-WGKWVAEIREP---NKRSRIWLGSYCSPVAAARAYDTAVYYLRG 67
                69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.2321875IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-201876IPR016177DNA-binding domain
SMARTSM003802.7E-341881IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-281976IPR001471AP2/ERF domain
PRINTSPR003672.2E-111930IPR001471AP2/ERF domain
PfamPF008471.1E-91967IPR001471AP2/ERF domain
CDDcd000185.15E-231976No hitNo description
PRINTSPR003672.2E-115777IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MEPGGGSRAV SRRRSDKPYK GIRMRKWGKW VAEIREPNKR SRIWLGSYCS PVAAARAYDT  60
AVYYLRGPTA KLNFPEELSA VGLQDLSAES IRRVAAEVGA RVDALQSGGK GEHATNHQPL  120
KPSWFHDEID LNKEPEPEPE PVPEPEDQSI EYW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1419791576Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38522.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012840786.12e-68PREDICTED: ethylene-responsive transcription factor RAP2-10-like
SwissprotO221748e-47ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2Z7BV401e-108A0A2Z7BV40_9LAMI; Uncharacterized protein
STRINGMigut.L00172.1.p9e-68(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9432390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36900.11e-46related to AP2 10
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]