PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV38553.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

FAR1

Protein Properties

Length: 254aa MW: 28829.5 Da PI: 6.7227

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV38553.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	89.5	4.6e-28	88	175	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++ GF +r+sk ++s+r+g+ + r +vC+keg+r+++k++ k r+r+etr+gC+a++ v+k +g+w+vtk+++eH+H+l+p KZV38553.1 88 FYNAYATREGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRTPDKRE--KVVRQRMETRVGCRAMILVRKVGSGRWVVTKFVKEHTHPLTP 175 ****************************************9988..999**********************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.9E-25	88	175	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDFEIDGEIN GEVLGSSIHF EARTDNGNVI VGSSSDEILQ QGLDKVNEES SKMELFQIED 60 LEAVNCSGPT GDPFVGLEFE SEAAAHAFYN AYATREGFVI RVSKLSRSRR DGSAIGRALV 120 CNKEGFRTPD KREKVVRQRM ETRVGCRAMI LVRKVGSGRW VVTKFVKEHT HPLTPGRGRR 180 DLICDQYPNE HDKIQELSRQ LAVEKKKVAT YKRHLEMIFE HIEEHNQSLS KKLQDIVNSV 240 NEMESKEGLG PRYY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV38553.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011098324.1	1e-146	protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2Z7BVC2	0.0	A0A2Z7BVC2_9LAMI; Uncharacterized protein
STRING	Migut.H01929.1.p	1e-136	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11568	23	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	2e-87	FAR1 family protein