PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV38555.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB_related
Protein Properties Length: 474aa    MW: 53841.8 Da    PI: 6.4627
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV38555.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.12.6e-10424471347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                      +W++ E++ l  +v+++G+g+Wk I        + Rt+ ++k++w+++
       KZV38555.1 424 KWSPLEEDTLRTGVEKYGKGHWKVILTAYHdifEDRTEVDLKDKWRNL 471
                      8*********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.1E-12417473IPR009057Homeodomain-like
PROSITE profilePS5129414.085417474IPR017930Myb domain
SMARTSM007172.8E-7421474IPR001005SANT/Myb domain
SuperFamilySSF466892.57E-14423473IPR009057Homeodomain-like
CDDcd116601.72E-17423473No hitNo description
PfamPF002498.3E-9424471IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009901Biological Processanther dehiscence
GO:0010152Biological Processpollen maturation
GO:0043067Biological Processregulation of programmed cell death
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MDIDPDISNW ILDFLLRQPL EDRTLNTLLR TLPLPDDKPN LKILLLLRKL DSDVSRNSIS  60
ECALEVLERL EEISFQRGVE AVSDEMKQAY CSVAVECTVR YLVNGHCGEI DGKFKFFEAV  120
KRLWRGRVGR MERLSGKGGL GSEELWDWKD EMEAAVWEDS ACENVLKRSK TVNATEALRI  180
YIKQERERMG PSFIELVAQI LKDDEVLKEV LVIGRSDSIA GEHESTHYAG RNSDPGVHNN  240
EVQKGKFRPQ HMLVGSNRSR GVKIADSGST KTGQSYRNYK LPSSAEVNRV QEALESSSLE  300
LQAVVKDPLP DALRLAESIS DMAGQSKSHD PMETEHVEAN LFVADGAGVV QGNGCTADNV  360
HRPSLMERNS SARTYEWEDS IHNSQGGSEE DGVRHKLPSP KKIHVSPLNK YEVKIFKKRR  420
KIRKWSPLEE DTLRTGVEKY GKGHWKVILT AYHDIFEDRT EVDLKDKWRN LTRY
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1416420KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV38555.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011090069.11e-159telomere repeat-binding protein 2-like
TrEMBLA0A2Z7C2Q70.0A0A2Z7C2Q7_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37742439
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58340.23e-18MYB_related family protein