PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV39449.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 229aa MW: 25072.7 Da PI: 8.1317

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV39449.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	132.6	1.6e-41	49	148	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e++r d+++slvyeA++r+rdPvyG++g i++lqqq+e l+ael+++k+ KZV39449.1 49 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAENQRADTANSLVYEANVRLRDPVYGCMGAISALQQQVEALQAELNAVKA 147 7***********************************************************************************************998 PP DUF260 100 e 100 e KZV39449.1 148 E 148 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.265	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	3.5E-41	49	146	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MFCEEFFGRE RFEEIAKKIK RETNVIAPSR GGRRHMLGPP AGTLDTVTPC AACKLLRRRC 60 AQECPFSPYF SPHEPQKFAS VHKVFGASNV SKMLMEVAEN QRADTANSLV YEANVRLRDP 120 VYGCMGAISA LQQQVEALQA ELNAVKAEIL KFKYRETNNS INLPSPHHIV ATHSSGTISI 180 AAPPPPPEPP LPSPPPSLPI TPSMYNTVVI TSSASDFSTL TDGNITYFG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	49	159	11	121	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	49	159	11	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV39449.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022764403.1	2e-98	LOB domain-containing protein 15-like
Swissprot	Q8L5T5	3e-78	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	A0A2Z7BY89	1e-168	A0A2Z7BY89_9LAMI; LOB domain-containing protein 15
STRING	cassava4.1_031813m	8e-97	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	2e-70	LOB domain-containing protein 15

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]