PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39554.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 177aa    MW: 19994 Da    PI: 10.1975
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39554.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.61.6e-092391148
                     HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     ll+++ + +G g+W++++ + g++R++k+c++rw +yl
       KZV39554.1  2 LLKKCMATYGEGRWHLVPLRAGLNRCRKSCRLRWVNYL 39
                     6889999*****************************97 PP
2Myb_DNA-binding50.35.7e-164589147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg +T++E +l ++++k+lG++ W++Ia +++ gRt++++k++w+++
       KZV39554.1 45 RGCFTADEIDLMIRLHKLLGNR-WSLIAGRIP-GRTANDVKNYWNTH 89
                     899*******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.67141IPR001005SANT/Myb domain
PROSITE profilePS5129410.615139IPR017930Myb domain
PfamPF002492.3E-8239IPR001005SANT/Myb domain
SuperFamilySSF466896.64E-21286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-14246IPR009057Homeodomain-like
CDDcd001671.04E-5239No hitNo description
PROSITE profilePS5129421.7384094IPR017930Myb domain
SMARTSM007171.0E-134492IPR001005SANT/Myb domain
PfamPF002493.0E-144589IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-214792IPR009057Homeodomain-like
CDDcd001672.92E-114890No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MLLKKCMATY GEGRWHLVPL RAGLNRCRKS CRLRWVNYLS PDIKRGCFTA DEIDLMIRLH  60
KLLGNRWSLI AGRIPGRTAN DVKNYWNTHV SKASSSMKSS QTKIVKPKPH NLAKSAASNL  120
QPHQASIGEE TPQHIHQTTP HSIQMGPNTG SDHLSHGDGL VREMSTCFWE LLEFDVV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-1759620110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39554.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769216.11e-57transcription factor MYB90-like isoform X2
SwissprotQ9FNV96e-50MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2Z7BYS81e-130A0A2Z7BYS8_9LAMI; Uncharacterized protein
STRINGGorai.001G087200.15e-55(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.13e-50myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]