PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV39578.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 540aa    MW: 60657.8 Da    PI: 6.7025
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV39578.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.6e-14364410455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h  +ErrRR+++N++f  Lr+l+P       +K++Ka+iL  ++eY+k+L+
  KZV39578.1 364 NHVLAERRRREKLNERFIILRSLVPFI-----TKMDKASILGDTIEYVKQLR 410
                 7999**********************7.....6*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.2E-4410175IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.504360409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.92E-16363414No hitNo description
SuperFamilySSF474591.57E-18363424IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-11364409IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-18364425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.0E-17366415IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5167110.096470540IPR002912ACT domain
CDDcd021160.00346471525No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 540 aa     Download sequence    Send to blast
MATPSQRSRL QSMLQAAVQA VRWTYSIFWQ LDRRQGILVW SDGYYNGAIK TRKTVQPTEV  60
STEEATLQRS QQLKELYDSL SDGETCLQSR RPSTALSPED LTDPEWFYLM CISFSFPPEV  120
GLPGRAYSDG QHVWLSGANE VDPINFSRAI LAKTVICIPL LDGVIELGTT QMVMTVYFCC  180
HHFVSHLSMS TVLVMPPNEP EYGRADLAFE HEAEPGSDAG GGAGNTENPG GTSLDVAVDI  240
RLGSPDDGSE NLDFDDVPRW PFLQGPSSSH QTHPNFASLT QEDTHYPRTV STILQNQPGR  300
WPNSSFSTLS SALSKYSAAR DRRLYNGVSQ WMLKYMLFTV PFLHIKSSRR GSSCHQDEQL  360
MSVNHVLAER RRREKLNERF IILRSLVPFI TKMDKASILG DTIEYVKQLR KKIQELERHS  420
RYMEADTNNN NIKRKLMIVD GTSGDGCNAG ESSKLGFVQV EVSIIESDAL VEIKCRHKQG  480
LLLDVLQTLR KYRIEVTAVQ STIIEGVFAA DIRAKIEETV KGKRASIMDV KRAINNIIDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-20717310178Transcription factor MYC3
4rqw_B1e-20717310178Transcription factor MYC3
4rru_A1e-20717349217Transcription factor MYC3
4rs9_A1e-20717310178Transcription factor MYC3
4ywc_A1e-20717349217Transcription factor MYC3
4ywc_B1e-20717349217Transcription factor MYC3
4yz6_A1e-20717310178Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1368373ERRRRE
2369374RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV39578.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017981704.10.0PREDICTED: basic helix-loop-helix protein A isoform X2
SwissprotE3SXU41e-175BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLA0A2Z7C1590.0A0A2Z7C159_9LAMI; BHLH-like DNA binding protein
STRINGEOX947960.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90282022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.11e-136bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]