PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV39956.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NF-YC

Protein Properties

Length: 254aa MW: 28056 Da PI: 5.1031

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV39956.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	39.5	1.2e-12	1	69	30	98
NF-YC 30 lkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98 ++adedv +i+ +Pvl+ska elf+ +l r++ + + +t+ ++ +v + ++fdfl d+v + KZV39956.1 1 MQADEDVGKIAMAVPVLVSKALELFLQDLCDRTYDITLQRGAKTVSALHLKHCVHSYNVFDFLKDVVSK 69 899***************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.0E-12	1	54	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	4.8E-19	1	68	IPR009072	Histone-fold
SuperFamily	SSF47113	1.76E-19	1	71	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005829	Cellular Component	cytosol
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MQADEDVGKI AMAVPVLVSK ALELFLQDLC DRTYDITLQR GAKTVSALHL KHCVHSYNVF 60 DFLKDVVSKV PDYGHSDNAA EMPKRRKLES NDCDEESKRA SMPETCHPSS SGRGRGRGRG 120 RGRGRPSKAT ERDTCRHEVE SVSTTTTQTI KVILSPRQPV ERISDLKQSQ EDNIKVVDTV 180 HSQTSKNFDL NAGVDEISEK STPAAAATIP GPSDGKNEEY PGLSETDRMT IDPVHLAQLS 240 SRLDEDDEDY DNEG

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	114	123	RGRGRGRGRG
2	114	124	RGRGRGRGRGR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV39956.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020553014.1	1e-104	dr1-associated corepressor-like isoform X2
TrEMBL	A0A2Z7C0A3	0.0	A0A2Z7C0A3_9LAMI; Uncharacterized protein
STRING	Migut.N01867.1.p	1e-86	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7960	22	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G12480.1	3e-52	nuclear factor Y, subunit C11