PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV40009.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NF-YC

Protein Properties

Length: 135aa MW: 15572.1 Da PI: 10.2356

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV40009.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	44.2	4.2e-14	15	97	17	98
NF-YC 17 knhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd.ifdflvdivpr 98 ++ e+P r+k+i+k d+d++++ +ea l++ + elfi l+ rs + e+k++t++ + av+r + + dfl+ p+ KZV40009.1 15 HQLEIPTRRVKNIMKLDKDINKVNSEALHLIACSTELFIEFLAERSARVSLEKKKKTIRLEHLRVAVKRHQpTGDFLLSSLPK 97 4567899************************************************************9976377999988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.2E-17	15	82	IPR009072	Histone-fold
SuperFamily	SSF47113	1.43E-15	16	92	IPR009072	Histone-fold
Pfam	PF00808	2.8E-17	18	81	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 135 aa Download sequence Send to blast
MAAQEEEDSI TMEPHQLEIP TRRVKNIMKL DKDINKVNSE ALHLIACSTE LFIEFLAERS 60 ARVSLEKKKK TIRLEHLRVA VKRHQPTGDF LLSSLPKPSQ PSDQQLLKDR VKVRPAEKPV 120 PFATRRIDAF FQKCT

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV40009.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011086780.2	2e-61	nuclear transcription factor Y subunit gamma isoform X1
Refseq	XP_011086781.2	2e-61	nuclear transcription factor Y subunit gamma isoform X2
TrEMBL	A0A2Z7BZU5	9e-93	A0A2Z7BZU5_9LAMI; Chromatin accessibility complex protein 1
STRING	PGSC0003DMT400074841	4e-57	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11435	24	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43250.1	2e-37	nuclear factor Y, subunit C13