PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40291.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family bHLH
Protein Properties Length: 217aa    MW: 24281.3 Da    PI: 6.0223
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40291.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.23.3e-09108155455
                 HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 +h+ +Er RR++iN+++  L++l+P +     k +  a +L   ++Y++sLq
  KZV40291.1 108 SHSLAERLRREKINEKLRSLQDLVPGC----YKTMGMAVMLDVIINYVRSLQ 155
                 8*************************8....355888888999999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.26E-16102172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-12102158No hitNo description
Gene3DG3DSA:4.10.280.106.9E-16104165IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.529104154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-6108155IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.9E-8110160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:2000488Biological Processpositive regulation of brassinosteroid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MPFSDDVFSD HQQPQLPTIF NDDISRSIEP DVSVPHLSSS FFPSSHGCSN IDFNLVNLTS  60
SVSGTDFATP PNKNYCGKKR KRSIGREFAE KPREVVHVRA KRGQATDSHS LAERLRREKI  120
NEKLRSLQDL VPGCYKTMGM AVMLDVIINY VRSLQNQIDF LSMKLSAASL FYDFNSSEAE  180
AMEAIQGTAG YEVQGMEKII GEDYGSGISQ FQTPWTL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17782KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40291.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078318.24e-90transcription factor bHLH75
SwissprotA4D9983e-52BH075_ARATH; Transcription factor bHLH75
TrEMBLA0A2Z7C0D51e-162A0A2Z7C0D5_9LAMI; Uncharacterized protein
STRINGMigut.L01053.1.p6e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA90691724
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25330.19e-55bHLH family protein
Publications ? help Back to Top
  1. Khan M, et al.
    Interplay between phosphorylation and SUMOylation events determines CESTA protein fate in brassinosteroid signalling.
    Nat Commun, 2014. 5: p. 4687
    [PMID:25134617]
  2. Eremina M, et al.
    Brassinosteroids participate in the control of basal and acquired freezing tolerance of plants.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(40): p. E5982-E5991
    [PMID:27655893]
  3. Pfannebecker KC,Lange M,Rupp O,Becker A
    Seed Plant-Specific Gene Lineages Involved in Carpel Development.
    Mol. Biol. Evol., 2017. 34(4): p. 925-942
    [PMID:28087776]