PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40533.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 403aa    MW: 45188.4 Da    PI: 4.7096
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40533.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF53.43.2e-17857150
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
      SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                k+i++ ++ qvtfskRr  ++KKA+E+ + Cd++va + fs++g++  ++
  KZV40533.1  8 KKIQDVTKCQVTFSKRRSSLIKKANEIAICCDVDVAFVAFSPSGRVSKFC 57
                689999****************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-18159IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.17160IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-14222IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.11E-21378IPR002100Transcription factor, MADS-box
PfamPF003194.8E-18956IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-142237IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-143758IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MGRKIDMKKI QDVTKCQVTF SKRRSSLIKK ANEIAICCDV DVAFVAFSPS GRVSKFCNQR  60
RIEDVLRRFV DLPPERRLTD YELGPEQEPS LHQLCWSERN LNRSLEKVIA WKNALLSCNG  120
STSYSQPTMQ MEQQELGSQF GVPFSYNSSE NELGPTNENS NSTGQILLQL DPWISPYSAR  180
FRDSILKDLL LDPSNPTPNN VNQGSLNKVT MLPIQDSLSI FESHSGIFPT SFDPPIPSPQ  240
IPHQQSLAVD QTLLCFPNQI NNVTSDGLGN PAPRFTSSTT VPTNVRIIGD PQILCDGMDQ  300
NELRYENLKW SELANMPAEE YTSHFSNNKI SVSSGDANYS TGLNYYGIPK GIDHSVDPFR  360
AHPTEVDNFG ESSLGTSRNL TSGQWEWEDF LLDDNVNFGD FTK
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40533.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7C7R30.0A0A2Z7C7R3_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA37851219
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.15e-23AGAMOUS-like 104