PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40687.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family CO-like
Protein Properties Length: 439aa    MW: 49585.6 Da    PI: 5.6942
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40687.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.5e-091760340
    zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                +r C+++ +k+++++C  ++ +lC++C ++ H+       H++v
  KZV40687.1 17 ARACDNCIKKRARWYCAADDAFLCQSCDSSVHSAntlarrHERV 60
                678*****************************657787788776 PP
2CCT68.12.3e-23382425144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  KZV40687.1 382 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 425
                 9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.7931562IPR000315B-box-type zinc finger
SMARTSM003365.3E-101562IPR000315B-box-type zinc finger
PfamPF006431.9E-71760IPR000315B-box-type zinc finger
CDDcd000217.08E-101862No hitNo description
PROSITE profilePS5101716.083382424IPR010402CCT domain
PfamPF062035.9E-18382424IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MMNSAKKLSS AVGAKSARAC DNCIKKRARW YCAADDAFLC QSCDSSVHSA NTLARRHERV  60
CLKIASIKSL DAKLQTSVPS WHQGFTRKAR TPRQKKQSKF NFSDESIARV QNPLHLVPEI  120
YSEENSHEEN EEQLLYRVPI FDPFVAELCN SGEAMNNSNH AESIKQGFGN DQSKALSNDL  180
SPDMKRLHVF LPSEADLAEF AADVESLLGK GLEDELFDME GLGLMDCDDQ KERKNSDSFE  240
IERVKVEEEY ITLEHNHDQV GVEIDLGRET FELNFDYDSP IASQEEENKA AQSGDQNLIN  300
IVEDSYKAGD DINKVNFLRL DYEGLMTAWD GQKSPWTTGE RPEIDFGDCW PDCMGTCGAM  360
HAYGEMVVAS GHGGAAMLDG GREARVSRYR EKRRTRLFSK KIRYEVRKLN AEKRPRMKGR  420
FVKRTSFVTP APPLIPFAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1392408RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40687.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076793.20.0zinc finger protein CONSTANS-LIKE 16
TrEMBLA0A2Z7C1V00.0A0A2Z7C1V0_9LAMI; Zinc finger protein CONSTANS-LIKE 16
STRINGVIT_01s0011g03520.t011e-164(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA15392470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.14e-97B-box type zinc finger protein with CCT domain