PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40729.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family B3
Protein Properties Length: 73aa    MW: 8657.9 Da    PI: 8.4814
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40729.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3474.6e-153474386
                S-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE.E-S CS
          B3 43 grsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk.ldg 86
                 + W+++++y+ +s+++v+t+GW+ Fvk++ Lk +D+v+F+ +++
  KZV40729.1  3 MKLWKFRFCYWSSSQTFVFTRGWNAFVKEKSLKPKDMVIFStYEH 47
                688*************************************94333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.743166IPR003340B3 DNA binding domain
CDDcd100177.61E-10242No hitNo description
PfamPF023623.1E-12348IPR003340B3 DNA binding domain
SuperFamilySSF1019365.69E-13348IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-14449IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MSMKLWKFRF CYWSSSQTFV FTRGWNAFVK EKSLKPKDMV IFSTYEHSDG LDEVGRVFSL  60
DVLYNNNAEH PPI
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40729.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011083994.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083995.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083998.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_011083999.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550901.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550902.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550903.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
RefseqXP_020550904.13e-23AP2/ERF and B3 domain-containing transcription factor At1g50680
SwissprotQ9C6881e-16RAVL3_ARATH; AP2/ERF and B3 domain-containing transcription factor At1g51120
TrEMBLA0A2Z7A6L84e-47A0A2Z7A6L8_9LAMI; Uncharacterized protein
TrEMBLA0A2Z7C2J64e-48A0A2Z7C2J6_9LAMI; Uncharacterized protein
STRINGGLYMA20G39140.23e-20(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52522339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51120.16e-19RAV family protein