PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV40964.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HSF
Protein Properties Length: 309aa    MW: 33674.5 Da    PI: 4.9945
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV40964.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind112.82.2e-35221122101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++lisw+e+g++f+v+ + efa+++Lpk Fkh+nf+SFvRQLn+YgF+k+  ++         weF++++F+kg+k ll++i+
    KZV40964.1  22 FLTKTYQLVDDPNTDDLISWNEDGTAFIVWRPAEFARDLLPKCFKHNNFSSFVRQLNTYGFRKLVPDR---------WEFANDYFRKGEKALLKDIQ 109
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r++
    KZV40964.1 110 RRR 112
                   *97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004151.2E-5618111IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.103.5E-3719111IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.26E-3519111IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.3E-3222111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-202245IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-206072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-207385IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MSGDSTVGSS GGESQRSIPT PFLTKTYQLV DDPNTDDLIS WNEDGTAFIV WRPAEFARDL  60
LPKCFKHNNF SSFVRQLNTY GFRKLVPDRW EFANDYFRKG EKALLKDIQR RRMPTAVATS  120
SMPTEGIAVN SQTVSVAVSP VAYIQVSPTN SGEEQVFSSN SSPVVNAATA APTAMLLACT  180
SASDIFEENE RLRKENSHLS EELNRLKSLF GKVCTLMSTY ARTKGEAGLP VGRGLDAMEI  240
AEAEGGGPTL SDGGGRAEDD KGESFPRIFG VSLAAKRSRR SMEDESRCCE PQIKSEPQNS  300
GNSADHDPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-242211129129Heat shock factor protein 1
5d5v_B2e-242211129129Heat shock factor protein 1
5d5v_D2e-242211129129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00432DAPTransfer from AT4G11660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV40964.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012846526.11e-107PREDICTED: heat stress transcription factor B-2b
SwissprotQ9T0D32e-82HFB2B_ARATH; Heat stress transcription factor B-2b
TrEMBLA0A2Z7C2340.0A0A2Z7C234_9LAMI; Heat stress transcription factor B-2b
STRINGMigut.A00803.1.p1e-107(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21822460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11660.11e-83HSF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]