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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KZV41026.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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| Family | GRAS | ||||||||
| Protein Properties | Length: 598aa MW: 64829.5 Da PI: 7.3023 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 338.2 | 1.5e-103 | 223 | 597 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
++ L++ A a+s+g+ e a +L+rl++ as++g++ qRlaa+++ L++r++ ++ +p + +e s+e+ a ++++e s ++k+++++aN
KZV41026.1 223 RQSLIDLALAISEGKPEIAADILTRLQHVASSKGNSEQRLAAHVLSSLKSRVNP----VV---NPPPVAELYSKEQSVAAQMLYEFSSCFKLGFMAANL 314
689**************************************************9....44...55555555599999999******************* PP
GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egpp..slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
aIlea++++ +++H++D+di+qG+Q++ Ll+aLa+++ eg+p +l+iT++ ++++ s+e+++++ge L+++A++l+v++ + v ++++l
KZV41026.1 315 AILEATSEHgfTKIHVVDLDIGQGGQYMHLLHALAAKKsEGKPtsMLKITTLTDSAAAargcsSEEKVRTVGEELKSLASKLDVSLAICV-KNVNITEL 412
******998889***********************77765555459********8877999*9**************************9.899***** PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
+ e+L++kp+EalaVn+++ql++l+desv++e++rde+L+ vk+lsP+v ++veqe++ n++++++r+ e +e+y al+dsl+a++p+++++r+ +E+
KZV41026.1 413 SRENLDIKPDEALAVNFAFQLYKLPDESVTTENPRDEMLRRVKGLSPTVTTIVEQEMNANTAPLVARVREVCEHYGALLDSLDATVPKDNSNRVRIEEG 511
*************************************************************************************************** PP
GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
l+r+i+n vaceg++r+er+e ++kWr+r+++aGFk p+s+ aa++ ++ l+ + g++v+e+sg +++gW++r+L+++SaW
KZV41026.1 512 -LSRKIKNSVACEGRDRVERCEVFGKWRARVGMAGFKIRPMSQLAADSLRSKLHSGTrvNPGFTVNEQSGGICFGWMGRTLTVASAW 597
.************************************************999987655789************************** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 45.504 | 196 | 576 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 5.1E-101 | 223 | 597 | IPR005202 | Transcription factor GRAS |
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 598 aa Download sequence Send to blast |
MSSGFSGGVP DFFTAGRRTT NMPLSMDSNN LNSQQQNILQ QQGLGFYLRN VKPRPNYQHA 60 SPVSTLSPVD FPPVTTLSPD VSSMSSSLVN NTNPRYGFPI LHQQRLQPLI LSNTTNVNNV 120 TSGIPLPKLV LNQASVILGP GHDLSAQECE KNILNHKLQE LEKQLLGDED EGEAASVITS 180 NGWSETIQNL INPEQKPISP SPTSSSSSSC SSTSASPPLP CSRQSLIDLA LAISEGKPEI 240 AADILTRLQH VASSKGNSEQ RLAAHVLSSL KSRVNPVVNP PPVAELYSKE QSVAAQMLYE 300 FSSCFKLGFM AANLAILEAT SEHGFTKIHV VDLDIGQGGQ YMHLLHALAA KKSEGKPTSM 360 LKITTLTDSA AAARGCSSEE KVRTVGEELK SLASKLDVSL AICVKNVNIT ELSRENLDIK 420 PDEALAVNFA FQLYKLPDES VTTENPRDEM LRRVKGLSPT VTTIVEQEMN ANTAPLVARV 480 REVCEHYGAL LDSLDATVPK DNSNRVRIEE GLSRKIKNSV ACEGRDRVER CEVFGKWRAR 540 VGMAGFKIRP MSQLAADSLR SKLHSGTRVN PGFTVNEQSG GICFGWMGRT LTVASAWS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 6e-40 | 219 | 597 | 9 | 374 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KZV41026.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011076123.1 | 0.0 | scarecrow-like protein 8 | ||||
| TrEMBL | A0A2Z7C294 | 0.0 | A0A2Z7C294_9LAMI; Scarecrow-like protein 8-like | ||||
| STRING | Migut.F01094.1.p | 0.0 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA4023 | 24 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52510.1 | 1e-138 | SCARECROW-like 8 | ||||




