PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41026.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 598aa    MW: 64829.5 Da    PI: 7.3023
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41026.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS338.21.5e-1032235972373
        GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                 ++ L++ A a+s+g+ e a  +L+rl++ as++g++ qRlaa+++  L++r++     ++   +p + +e  s+e+  a ++++e s ++k+++++aN 
  KZV41026.1 223 RQSLIDLALAISEGKPEIAADILTRLQHVASSKGNSEQRLAAHVLSSLKSRVNP----VV---NPPPVAELYSKEQSVAAQMLYEFSSCFKLGFMAANL 314
                 689**************************************************9....44...55555555599999999******************* PP

        GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egpp..slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
                 aIlea++++  +++H++D+di+qG+Q++ Ll+aLa+++ eg+p  +l+iT++ ++++      s+e+++++ge L+++A++l+v++ + v    ++++l
  KZV41026.1 315 AILEATSEHgfTKIHVVDLDIGQGGQYMHLLHALAAKKsEGKPtsMLKITTLTDSAAAargcsSEEKVRTVGEELKSLASKLDVSLAICV-KNVNITEL 412
                 ******998889***********************77765555459********8877999*9**************************9.899***** PP

        GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
                 + e+L++kp+EalaVn+++ql++l+desv++e++rde+L+ vk+lsP+v ++veqe++ n++++++r+ e +e+y al+dsl+a++p+++++r+ +E+ 
  KZV41026.1 413 SRENLDIKPDEALAVNFAFQLYKLPDESVTTENPRDEMLRRVKGLSPTVTTIVEQEMNANTAPLVARVREVCEHYGALLDSLDATVPKDNSNRVRIEEG 511
                 *************************************************************************************************** PP

        GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
                  l+r+i+n vaceg++r+er+e ++kWr+r+++aGFk  p+s+ aa++ ++ l+     + g++v+e+sg +++gW++r+L+++SaW
  KZV41026.1 512 -LSRKIKNSVACEGRDRVERCEVFGKWRARVGMAGFKIRPMSQLAADSLRSKLHSGTrvNPGFTVNEQSGGICFGWMGRTLTVASAW 597
                 .************************************************999987655789************************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.504196576IPR005202Transcription factor GRAS
PfamPF035145.1E-101223597IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 598 aa     Download sequence    Send to blast
MSSGFSGGVP DFFTAGRRTT NMPLSMDSNN LNSQQQNILQ QQGLGFYLRN VKPRPNYQHA  60
SPVSTLSPVD FPPVTTLSPD VSSMSSSLVN NTNPRYGFPI LHQQRLQPLI LSNTTNVNNV  120
TSGIPLPKLV LNQASVILGP GHDLSAQECE KNILNHKLQE LEKQLLGDED EGEAASVITS  180
NGWSETIQNL INPEQKPISP SPTSSSSSSC SSTSASPPLP CSRQSLIDLA LAISEGKPEI  240
AADILTRLQH VASSKGNSEQ RLAAHVLSSL KSRVNPVVNP PPVAELYSKE QSVAAQMLYE  300
FSSCFKLGFM AANLAILEAT SEHGFTKIHV VDLDIGQGGQ YMHLLHALAA KKSEGKPTSM  360
LKITTLTDSA AAARGCSSEE KVRTVGEELK SLASKLDVSL AICVKNVNIT ELSRENLDIK  420
PDEALAVNFA FQLYKLPDES VTTENPRDEM LRRVKGLSPT VTTIVEQEMN ANTAPLVARV  480
REVCEHYGAL LDSLDATVPK DNSNRVRIEE GLSRKIKNSV ACEGRDRVER CEVFGKWRAR  540
VGMAGFKIRP MSQLAADSLR SKLHSGTRVN PGFTVNEQSG GICFGWMGRT LTVASAWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-402195979374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV41026.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076123.10.0scarecrow-like protein 8
TrEMBLA0A2Z7C2940.0A0A2Z7C294_9LAMI; Scarecrow-like protein 8-like
STRINGMigut.F01094.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40232443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-138SCARECROW-like 8