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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | KZV41027.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
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| Family | GRAS | ||||||||
| Protein Properties | Length: 637aa MW: 69184.5 Da PI: 7.7621 | ||||||||
| Description | GRAS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | GRAS | 340.9 | 2.2e-104 | 262 | 636 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
++ L++ A a+s+g+ e a +L+rl++ as++g++ qRlaa+++ L++r++ ++ +p + +e s+e+ a ++++e s ++k+++++aN
KZV41027.1 262 RQSLIDLALAISEGKPEIAADILTRLQHVASSKGNSEQRLAAHVLSSLKSRVNP----VV---NPPPVAELYSKEQSVAAQMLYEFSSCFKLGFMAANL 353
689**************************************************9....44...55555555599999999******************* PP
GRAS 101 aIleavege..ervHiiDfdisqGlQWpaLlqaLasRp.egpp..slRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledl 189
aIlea++++ +++H++D+di+qG+Q++ Ll+aLa+++ eg+p +l+iT++ ++++ s+e+++++ge L+++A++l+v++ + v ++++l
KZV41027.1 354 AILEATSEHgfTKIHVVDLDIGQGGQYMHLLHALAAKKsEGKPtsMLKITTLTDSAAAargcsSEEKVRTVGEELKSLASKLDVSLAICV-KNVNITEL 451
******998889***********************77765555459********8877999*9**************************9.899***** PP
GRAS 190 eleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288
+ e+L++kp+EalaVn+++ql++l+desv++e++rde+L+ vk+lsP+v+++veqe++ n++++++r+ e +e+y al+dsl+a++p+++++r+ +E+
KZV41027.1 452 SRENLDIKPDEALAVNFAFQLYKLPDESVTTENPRDEMLRRVKGLSPTVMTIVEQEMNANTAPLVARVREVCEHYGALLDSLDATVPKDNSNRVRIEEG 550
*************************************************************************************************** PP
GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrveeesgslvlgWkdrpLvsvSaW 373
l+r+i+n vaceg++r+er+e ++kWr+r+++aGFk p+s+ aa++ ++ l+ + g++v+e+sg +++gW++r+L+++SaW
KZV41027.1 551 -LSRKIKNSVACEGRDRVERCEVFGKWRARVGMAGFKIRPMSQLAADSLRSKLHSGTrvNPGFTVNEQSGGICFGWMGRTLTVASAW 636
.************************************************999987655789************************** PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50985 | 45.67 | 235 | 615 | IPR005202 | Transcription factor GRAS |
| Pfam | PF03514 | 7.7E-102 | 262 | 636 | IPR005202 | Transcription factor GRAS |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0005737 | Cellular Component | cytoplasm | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 637 aa Download sequence Send to blast |
MSSGFSGGVP DFFTAGRRTT NMPLSMDSNN LNSQQQVSFR SPLSGIQADP NAQIAVHRRA 60 DLLGKRSLAE FQHQQNILQQ QGLGFYLRNV KPRPNYQHAS PVSTLSPVDF PPVTTLSPDV 120 SSMSSSLVNN TNPRYGFPIL HQQRLQPLIL SNTTNVNNVT SGIPLPKLVL NQASVILGPG 180 HDLSAQECEK NILNHKLQEL EKQLLGDEDE GEAASVITSN GWSETIQNLI NPEQKPISPS 240 PTSSSSSSCS STSASPPLPC SRQSLIDLAL AISEGKPEIA ADILTRLQHV ASSKGNSEQR 300 LAAHVLSSLK SRVNPVVNPP PVAELYSKEQ SVAAQMLYEF SSCFKLGFMA ANLAILEATS 360 EHGFTKIHVV DLDIGQGGQY MHLLHALAAK KSEGKPTSML KITTLTDSAA AARGCSSEEK 420 VRTVGEELKS LASKLDVSLA ICVKNVNITE LSRENLDIKP DEALAVNFAF QLYKLPDESV 480 TTENPRDEML RRVKGLSPTV MTIVEQEMNA NTAPLVARVR EVCEHYGALL DSLDATVPKD 540 NSNRVRIEEG LSRKIKNSVA CEGRDRVERC EVFGKWRARV GMAGFKIRPM SQLAADSLRS 600 KLHSGTRVNP GFTVNEQSGG ICFGWMGRTL TVASAWS |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5hyz_A | 7e-40 | 258 | 636 | 9 | 374 | GRAS family transcription factor containing protein, expressed |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | KZV41027.1 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_011076123.1 | 0.0 | scarecrow-like protein 8 | ||||
| TrEMBL | A0A2Z7C2S6 | 0.0 | A0A2Z7C2S6_9LAMI; Uncharacterized protein | ||||
| STRING | Migut.F01094.1.p | 0.0 | (Erythranthe guttata) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA4023 | 24 | 43 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G52510.1 | 1e-139 | SCARECROW-like 8 | ||||




