PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV41188.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

NAC

Protein Properties

Length: 197aa MW: 23013.2 Da PI: 9.7173

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV41188.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	144.1	7.5e-45	28	152	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 p G+rF Pt+e+l+ +yL+kk++++++e +i +v+ yk++Pw+L + + ++ewyfF++r+ ky++g+r+nra+ +gyWkat d+++ + ++e+ KZV41188.1 28 PLGMRFAPTEEQLI-CYLRKKIKNEPFED-VCICSVNFYKYNPWELTdMYPTLAKDEWYFFTSRKLKYPNGSRPNRAAGDGYWKATVADQKIQE-RQEV 123 89**********.9******888.67**********8444444778**********************************9.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +g kktLvfy+g+ap+g+kt+W+mhey+l KZV41188.1 124 IGFKKTLVFYHGKAPNGKKTNWIMHEYTL 152 ***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.4E-46	24	159	IPR003441	NAC domain
PROSITE profile	PS51005	42.084	27	173	IPR003441	NAC domain
Pfam	PF02365	1.2E-23	28	152	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 197 aa Download sequence Send to blast
MERNQQSPTP ANPNQEPGPN ENAVPKFPLG MRFAPTEEQL ICYLRKKIKN EPFEDVCICS 60 VNFYKYNPWE LTDMYPTLAK DEWYFFTSRK LKYPNGSRPN RAAGDGYWKA TVADQKIQER 120 QEVIGFKKTL VFYHGKAPNG KKTNWIMHEY TLRQRSTRND ANNNMQVNNY SNSVNLTIPN 180 QFLIFSLILG PKLHEKL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-40	27	162	17	152	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-40	27	162	17	152	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-40	27	162	17	152	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-40	27	162	17	152	NO APICAL MERISTEM PROTEIN
3swm_A	3e-40	27	162	20	155	NAC domain-containing protein 19
3swm_B	3e-40	27	162	20	155	NAC domain-containing protein 19
3swm_C	3e-40	27	162	20	155	NAC domain-containing protein 19
3swm_D	3e-40	27	162	20	155	NAC domain-containing protein 19
3swp_A	3e-40	27	162	20	155	NAC domain-containing protein 19
3swp_B	3e-40	27	162	20	155	NAC domain-containing protein 19
3swp_C	3e-40	27	162	20	155	NAC domain-containing protein 19
3swp_D	3e-40	27	162	20	155	NAC domain-containing protein 19
4dul_A	2e-40	27	162	17	152	NAC domain-containing protein 19
4dul_B	2e-40	27	162	17	152	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May be involved in regulation of seed germination under flooding. {ECO:0000269\|PubMed:19176720}.
UniProt	Transcriptional activator that positively regulates age-dependent senescence, dark-induced leaf senescence and stress-induced senescence. Regulates leaf senescence through the modulation of the expression of senescence-associated genes SGR1/NYE1, SAG113 and SAUR36/SAG201, which are involved in chlorophyll degradation, and abscisic acid (ABA) and auxin promotion of senescence, respectively. Promotes reactive oxygen species (ROS) production during age-dependent and stress-induced senescence. Regulates positively auxin-mediated responses in roots (PubMed:27388337). Stress-responsive NAC transcription factor involved in ABA-inducible leaf senescence signaling (PubMed:26518251). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269\|PubMed:18849494, ECO:0000269\|PubMed:26518251, ECO:0000269\|PubMed:27388337}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV41188.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) (PubMed:26518251). Induced by salinity and osmotic stress, and during leaf senescence (PubMed:27388337). {ECO:0000269\|PubMed:26518251, ECO:0000269\|PubMed:27388337}.
UniProt	INDUCTION: By low-oxygen stress. {ECO:0000269\|PubMed:19176720}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019157746.1	9e-46	PREDICTED: NAC transcription factor 32-like
Swissprot	Q8H115	3e-43	NA102_ARATH; NAC domain-containing protein 102
Swissprot	Q9CAR0	2e-43	NAC32_ARATH; NAC transcription factor 32
TrEMBL	A0A2Z7CA29	1e-146	A0A2Z7CA29_9LAMI; Uncharacterized protein
STRING	Solyc10g083450.1.1	4e-44	(Solanum lycopersicum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G77450.1	1e-44	NAC domain containing protein 32

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Takasaki H, et al. SNAC-As, stress-responsive NAC transcription factors, mediate ABA-inducible leaf senescence. Plant J., 2015. 84(6): p. 1114-23 [PMID:26518251] Mahmood K,El-Kereamy A,Kim SH,Nambara E,Rothstein SJ ANAC032 Positively Regulates Age-Dependent and Stress-Induced Senescence in Arabidopsis thaliana. Plant Cell Physiol., 2016. 57(10): p. 2029-2046 [PMID:27388337] Allu AD,Brotman Y,Xue GP,Balazadeh S Transcription factor ANAC032 modulates JA/SA signalling in response to Pseudomonas syringae infection. EMBO Rep., 2016. 17(11): p. 1578-1589 [PMID:27632992] Mahmood K,Xu Z,El-Kereamy A,Casaretto JA,Rothstein SJ The Arabidopsis Transcription Factor ANAC032 Represses Anthocyanin Biosynthesis in Response to High Sucrose and Oxidative and Abiotic Stresses. Front Plant Sci, 2016. 7: p. 1548 [PMID:27790239] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]