PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41309.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family M-type_MADS
Protein Properties Length: 190aa    MW: 21577 Da    PI: 9.3493
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41309.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF68.18.2e-222067249
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                 i ++  r vtfskRrng++KKA ELS+LC+a++a+iifs+ ++ y +
  KZV41309.1 20 LIADENARVVTFSKRRNGLFKKATELSTLCAAKIAIIIFSPCNRAYSF 67
                5889999**********************************9999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.2E-311170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.3711171IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-271184IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-181333IPR002100Transcription factor, MADS-box
PfamPF003191.2E-222167IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-183348IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-184869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAPPDGRRKS MGRRKIDMKL IADENARVVT FSKRRNGLFK KATELSTLCA AKIAIIIFSP  60
CNRAYSFGNP NVDYVIDQFR NHFPVADPVA FVRGTNMQQL KDRCDEINEE LEMKKRKGKE  120
MEERLSGCRA LLEDLDLATL KEMKEKLERL REQLAGLRPK SGPGECSNVA RFSCLEEGNA  180
SPIPSDWLKL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P7e-151182172Myocyte-specific enhancer factor 2B
1tqe_Q7e-151182172Myocyte-specific enhancer factor 2B
1tqe_R7e-151182172Myocyte-specific enhancer factor 2B
1tqe_S7e-151182172Myocyte-specific enhancer factor 2B
5f28_C9e-151182172MEF2C
5f28_D9e-151182172MEF2C
6byy_A7e-151182172MEF2 CHIMERA
6byy_B7e-151182172MEF2 CHIMERA
6byy_C7e-151182172MEF2 CHIMERA
6byy_D7e-151182172MEF2 CHIMERA
6bz1_A8e-151182172MEF2 CHIMERA
6bz1_B8e-151182172MEF2 CHIMERA
6bz1_C8e-151182172MEF2 CHIMERA
6bz1_D8e-151182172MEF2 CHIMERA
6c9l_A7e-151182172Myocyte-specific enhancer factor 2B
6c9l_B7e-151182172Myocyte-specific enhancer factor 2B
6c9l_C7e-151182172Myocyte-specific enhancer factor 2B
6c9l_D7e-151182172Myocyte-specific enhancer factor 2B
6c9l_E7e-151182172Myocyte-specific enhancer factor 2B
6c9l_F7e-151182172Myocyte-specific enhancer factor 2B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV41309.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012827635.11e-50PREDICTED: uncharacterized protein LOC105948920
TrEMBLA0A2Z7C4731e-137A0A2Z7C473_9LAMI; Uncharacterized protein
STRINGMigut.I00404.1.p1e-52(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA1565666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G66656.16e-28AGAMOUS-like 91