PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41653.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NAC
Protein Properties Length: 483aa    MW: 54214.4 Da    PI: 4.9507
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41653.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.91.7e-5291371128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkg 97 
                 lp+GfrF+Ptd el+++yL++k++g++ e+ ++i+e+d++k+ePwdLp +  + + ++ew+fF+++d+ky++++r+nrat++gyWkatgkd++++skkg
  KZV41653.1   9 LPVGFRFRPTDLELIDHYLRNKINGRDKEV-SAIRELDVCKWEPWDLPdMsVIPSIDNEWFFFCPKDRKYQNSQRSNRATEKGYWKATGKDRNIVSKKG 106
                 79*************************999.88**************95346666889***************************************** PP

         NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                  ++g+kktLvfy+grap+g++t+Wv+heyr+
  KZV41653.1 107 VKIGMKKTLVFYSGRAPDGKRTHWVIHEYRA 137
                 *****************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.45E-586160IPR003441NAC domain
PROSITE profilePS5100554.9399160IPR003441NAC domain
PfamPF023652.6E-2710136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009814Biological Processdefense response, incompatible interaction
GO:0010200Biological Processresponse to chitin
GO:0070417Biological Processcellular response to cold
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MGVLPLKTLP VGFRFRPTDL ELIDHYLRNK INGRDKEVSA IRELDVCKWE PWDLPDMSVI  60
PSIDNEWFFF CPKDRKYQNS QRSNRATEKG YWKATGKDRN IVSKKGVKIG MKKTLVFYSG  120
RAPDGKRTHW VIHEYRATDK SLDGTHPGQD AFVLCRLFKK DDLRQDDSAN LDEVEDIASS  180
PTVTKSSADE AVIQACGGIE MQPPAGEKIP LTDSDSSSCP PYPDLEKLLG LCPPIQDPVE  240
WKVFSPMQME LGGPYLCTDS FSGEINGNPN TIPCQYGTNA TDIDIFLDSI LNDPEEQSCA  300
RNVENSGGSI PAVETNSSFG PGIMLRTRQT SNQVNALDPA EHGIAPRRMH LQMKLEIGPT  360
QCTLRGDSSD DIKVKDEQES AVNEDEDSVD LHTLNKLEES TSDETNQDQQ PKDLSRSLTA  420
KSKNLDKRHE YVPCVYLQRR GIAPSLYMPK IVVATSLILV LVGVLWYLLK IMNPKQEPFY  480
FLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-43816516170NO APICAL MERISTEM PROTEIN
1ut4_B4e-43816516170NO APICAL MERISTEM PROTEIN
1ut7_A4e-43816516170NO APICAL MERISTEM PROTEIN
1ut7_B4e-43816516170NO APICAL MERISTEM PROTEIN
3swm_A4e-43816519173NAC domain-containing protein 19
3swm_B4e-43816519173NAC domain-containing protein 19
3swm_C4e-43816519173NAC domain-containing protein 19
3swm_D4e-43816519173NAC domain-containing protein 19
3swp_A4e-43816519173NAC domain-containing protein 19
3swp_B4e-43816519173NAC domain-containing protein 19
3swp_C4e-43816519173NAC domain-containing protein 19
3swp_D4e-43816519173NAC domain-containing protein 19
4dul_A4e-43816516170NAC domain-containing protein 19
4dul_B4e-43816516170NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00398DAPTransfer from AT3G49530Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV41653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075874.11e-145NAC domain-containing protein 62
TrEMBLA0A2Z7CB340.0A0A2Z7CB34_9LAMI; Uncharacterized protein
STRINGMigut.F00136.1.p1e-130(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA33632448
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.15e-86NAC domain containing protein 62