PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41670.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family HD-ZIP
Protein Properties Length: 252aa    MW: 29094.4 Da    PI: 5.1426
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41670.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.31.5e-192071556
                SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                ++f++eq++ Le+ F ++ ++  +++ +LA+ lgL+ rqV +WFqNrRa++k
  KZV41670.1 20 RRFSDEQIKSLESIFDQETKLESRKKMQLARDLGLQPRQVAIWFQNRRARWK 71
                58*************************************************9 PP
2HD-ZIP_I/II118.14.8e-3818109293
  HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  + rr+s+eq+k+LE+ F++e+kLe+++K++lar+Lglqprqva+WFqnrRAR+k++q+E++y++Lk++yd+l  + ++L+ke+e+L+++l+e
   KZV41670.1  18 NDRRFSDEQIKSLESIFDQETKLESRKKMQLARDLGLQPRQVAIWFQNRRARWKARQIEQEYKVLKANYDNLYLHFDHLKKENESLQRQLQE 109
                  579**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.56E-181174IPR009057Homeodomain-like
PROSITE profilePS5007117.5891373IPR001356Homeobox domain
SMARTSM003892.2E-161577IPR001356Homeobox domain
CDDcd000861.18E-141774No hitNo description
PfamPF000465.4E-172071IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-192080IPR009057Homeodomain-like
PRINTSPR000319.1E-64453IPR000047Helix-turn-helix motif
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PRINTSPR000319.1E-65369IPR000047Helix-turn-helix motif
PfamPF021832.7E-1374112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MEALDQKAKS QEKKRIKNDR RFSDEQIKSL ESIFDQETKL ESRKKMQLAR DLGLQPRQVA  60
IWFQNRRARW KARQIEQEYK VLKANYDNLY LHFDHLKKEN ESLQRQLQEL SGVEKNLDED  120
DLNDHRVGGG FQANIPNDEN ISKPFGKVED REELVCWDED EVEISHLASP QTWDNLCSDG  180
LFEQSLGITQ NCRPPIHPST VSLRPQSAVR VTLKRGKEKG LYGSSSVVVA DSTISKDQNF  240
DDVSDVEEMG TC
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00650PBMTransfer from LOC_Os09g35910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV41670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011075911.14e-58homeobox-leucine zipper protein ATHB-12-like isoform X2
TrEMBLA0A2Z7CAH90.0A0A2Z7CAH9_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20412363
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.12e-39homeobox 7