PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV41736.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YB
Protein Properties Length: 163aa    MW: 18179.2 Da    PI: 4.8665
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV41736.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB39.51.4e-1226120796
       NF-YB   7 flPianvsrimkkvlP...anakis..kdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                 +lP + v r++k+ l    +++ is  +d+ +   e +  fi ++++ a+d c++ +r+ i+++d++ al ++ f ++++pl++ l+++r  +g 
  KZV41736.1  26 ELPKTIVRRLVKNKLSqlsSDCEISvlRDSLQAFSESARIFIHYLSAAANDICKESNRQIISAEDVFKALEEIEFTEFIAPLRASLEEFRRKNGG 120
                 6888999999998765111566776447999***********************************************************87765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.3E-2823155IPR009072Histone-fold
PfamPF008081.8E-82695IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471135.94E-2227137IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEAEKVNETA EKVNETAEMV LSHVEELPKT IVRRLVKNKL SQLSSDCEIS VLRDSLQAFS  60
ESARIFIHYL SAAANDICKE SNRQIISAED VFKALEEIEF TEFIAPLRAS LEEFRRKNGG  120
RKSGSSKAKD INKKAKKNEP SACNGDGIKQ QEDDNNDDGN SSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A3e-122711418100DNA polymerase epsilon subunit D
5y27_A3e-122711418100DNA polymerase epsilon subunit D
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV41736.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012850173.19e-66PREDICTED: DNA polymerase epsilon subunit 3
TrEMBLA0A2Z7C4B51e-114A0A2Z7C4B5_9LAMI; DNA polymerase epsilon subunit D
STRINGMigut.D02442.1.p3e-65(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA101612427
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.11e-37nuclear factor Y, subunit B11