PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV42264.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family MYB
Protein Properties Length: 210aa    MW: 23432.8 Da    PI: 10.7631
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV42264.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.9e-161158148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+W+ eEd ll+++++ +G g+W++++ + g++R++k+c++rw +yl
       KZV42264.1 11 RGAWSREEDVLLKKCIQIYGEGRWHLVPLRAGLNRCRKSCRLRWVNYL 58
                     89********************************************97 PP
2Myb_DNA-binding50.64.6e-1664109148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg +T++E +ll +++k+lG++ W++Ia +++ gRt++++k++w++++
       KZV42264.1  64 RGCFTADEVDLLRRLHKLLGNR-WSLIAGRIP-GRTANDVKNFWNTHM 109
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129423.623662IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-20761IPR009057Homeodomain-like
SuperFamilySSF466894.12E-278105IPR009057Homeodomain-like
SMARTSM007172.8E-141060IPR001005SANT/Myb domain
PfamPF002491.0E-141158IPR001005SANT/Myb domain
CDDcd001671.15E-101358No hitNo description
Gene3DG3DSA:1.10.10.605.1E-2262111IPR009057Homeodomain-like
PROSITE profilePS5129419.05263113IPR017930Myb domain
SMARTSM007171.3E-1463111IPR001005SANT/Myb domain
PfamPF002491.8E-1464108IPR001005SANT/Myb domain
CDDcd001672.75E-1167109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MGSGNREGVK RGAWSREEDV LLKKCIQIYG EGRWHLVPLR AGLNRCRKSC RLRWVNYLSP  60
NIKRGCFTAD EVDLLRRLHK LLGNRWSLIA GRIPGRTAND VKNFWNTHMA KTSSSPKGSK  120
PVEKKEIIKP KPHNVAMSIN KPQQSSEWGS NVVDTRETNK ISGKSVFPTQ KGSFSGGGPT  180
ADNWPTQADG GNGLSEISLG FWKMLEFGDV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-21111114103MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-201111158157MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-201111158157MYB PROTO-ONCOGENE PROTEIN
1mse_C4e-21111114103C-Myb DNA-Binding Domain
1msf_C4e-21111114103C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV42264.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769216.18e-63transcription factor MYB90-like isoform X2
SwissprotQ9FNV91e-55MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2Z7C5R61e-153A0A2Z7C5R6_9LAMI; R2r3-myb transcription factor
STRINGGorai.001G087200.13e-61(Gossypium raimondii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.17e-57myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]