PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV43288.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 645aa    MW: 72380.7 Da    PI: 7.7733
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV43288.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.88.1e-085778426
                ---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                ++C +f r G+Ck G++CkF H+
  KZV43288.1 57 RPCVYFTR-GFCKNGSTCKFLHS 78
                68999999.*************8 PP
2zf-CCCH18.63.3e-06136154423
                 ---SGGGGTS--TTTTT-SS CS
     zf-CCCH   4 elCrffartGtCkyGdrCkF 23 
                 ++C +far G+Ck G++CkF
  KZV43288.1 136 RPCVYFAR-GFCKNGSTCKF 154
                 69******.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.3E-45579IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.94E-55678IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55778IPR000571Zinc finger, CCCH-type
PfamPF006424.6E-55778IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.5915880IPR000571Zinc finger, CCCH-type
SMARTSM003560.89134158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.371137159IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MSPSGRSDSL VFLYSEDLNS IASPHSLPFH RRSCSANDAA FLSNLEDKGG GCGFVWRPCV  60
YFTRGFCKNG STCKFLHSDI GDGEGIEVET PSKNNSAFDE LLRVQALQQR RSCSANDAAF  120
LSNLEDGGGG CGFVWRPCVY FARGFCKNGS TCKFLRSDIG DGEGIEVETP GKNNSAFDEL  180
LRVQALQQRR NIFHQWDYIV VGVQAPGKFQ KRCLDLSHLS TQKLLSSYWL RDPHFVCDSR  240
VLVKPYKEKG KILDKQRARA LKLQHEHIEG VDYSVCLSPS VIDSREQLDI PFGSRMLFGA  300
QELMLRRKLE QEAELKHAIE FQGRRLMNLG LMDLKNQSLS HPFPPRMPSS YPHFSRRQFQ  360
LSTNQILSSY NINSDVSKVV QELAKSTTSA AKDEKLAVED IETSTNYKID TTNKVGSTCK  420
FLHSDIGDGE GIEVETPSKN NSAFDELLRV QALQQRRCIV VFYGLDFVCD SRVLVKPYKE  480
KGKILDKKLQ HEHIEGVDYS KVDESRTNGP EKPEPQPSLS AKNAKQLPSF LSETISVITN  540
QILSSYNINS DVSKVVQELA KSTTSAAKDE KLAVEDIETS TNYKIDIDHK QDKRDSRSTV  600
NFVGEDNSLS GRKSSKLVSR QTKEMPNQDV IPIVRTTPVR DIPIF
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV43288.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2Z7CFZ40.0A0A2Z7CFZ4_9LAMI; Zinc finger CCCH domain-containing protein 22
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA244122