PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV43667.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family NF-YB
Protein Properties Length: 119aa    MW: 13335.1 Da    PI: 8.9749
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV43667.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB121.43.9e-381771793
       NF-YB 17 mkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93
                mk++lP naki+k+ak+t+qec+sefisfvtseas+kc+re+rkt ngdd++wal++lGf++y e ++ yl+++r+ 
  KZV43667.1  1 MKQILPPNAKITKEAKQTMQECASEFISFVTSEASEKCHRENRKTTNGDDICWALCSLGFDRYSEGMSRYLARFRKS 77
                9**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008084.3E-19155IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.1E-35187IPR009072Histone-fold
SuperFamilySSF471139.26E-27183IPR009072Histone-fold
PRINTSPR006155.7E-161937No hitNo description
PROSITE patternPS0068502238IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006155.7E-163856No hitNo description
PRINTSPR006155.7E-165775No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 119 aa     Download sequence    Send to blast
MKQILPPNAK ITKEAKQTMQ ECASEFISFV TSEASEKCHR ENRKTTNGDD ICWALCSLGF  60
DRYSEGMSRY LARFRKSAAS IDTQSEDGRT GGNKLAQPLI FDFGILQKGT NTSPKQTKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B2e-301761792Transcription factor HapC (Eurofung)
4g92_B2e-301761792Transcription factor HapC (Eurofung)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV43667.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021673462.19e-44nuclear transcription factor Y subunit B-4-like
SwissprotO040272e-37NFYB4_ARATH; Nuclear transcription factor Y subunit B-4
TrEMBLA0A2G9IB645e-42A0A2G9IB64_9LAMI; Uncharacterized protein
STRINGLus100299086e-43(Linum usitatissimum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11124356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09030.18e-40nuclear factor Y, subunit B4
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]