PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV43808.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family TALE
Protein Properties Length: 388aa    MW: 44048.1 Da    PI: 6.9468
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV43808.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox23.78e-083113442154
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                 k +yp++e++++L +++gL+ +q+ +WF N+R +
  KZV43808.1 311 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 344
                 469*****************************87 PP
2ELK292.5e-10265286122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELKh+L+++Y+++++++++E++
  KZV43808.1 265 ELKHELKQGYKEKIVDIREEIL 286
                 9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-20100144IPR005540KNOX1
PfamPF037905.0E-18102143IPR005540KNOX1
SMARTSM012561.5E-25153208IPR005541KNOX2
PfamPF037911.5E-18157207IPR005541KNOX2
PROSITE profilePS512139.969265285IPR005539ELK domain
PfamPF037898.8E-7265286IPR005539ELK domain
SMARTSM011886.1E-4265286IPR005539ELK domain
PROSITE profilePS5007111.791285348IPR001356Homeobox domain
SuperFamilySSF466895.99E-16287352IPR009057Homeodomain-like
SMARTSM003893.8E-11287352IPR001356Homeobox domain
CDDcd000862.21E-11288349No hitNo description
Gene3DG3DSA:1.10.10.606.6E-25292349IPR009057Homeodomain-like
PfamPF059201.1E-17305344IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MPIHYQGHHH QAATASASLF RPILSDHHHS PNDKPPPPSQ PVPATNTWLH HPHHWLTQQS  60
QPSPPTPPDN NNNDHQQESG GGDNSNSNSN GGNNTNWERE KCKADILSHP LYEQLLSAHV  120
ACLRIATPVD QLPRIDAQLA QSQQVVAKYS VLGHGQPLDD KDLDHFMTHY VLLLSSFKEQ  180
LQQHVRVHAM EAVMACWELE QSLQSLTGVA PGEGTGATMS DDDEDQADSE TNLFDESLDG  240
PDSLGFGPLV PTESERSLME RVRLELKHEL KQGYKEKIVD IREEILRKRR AGKLPGDTTS  300
VLKNWWQSHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN QRKRNWHSNP SSSTSQKSKR  360
KRMGPGWGRK WTFRQLLMDK IMNVGNMH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A3e-12288352872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1341361RKRNWHSNPSSSTSQKSKRKR
Functional Description ? help Back to Top
Source Description
UniProtMay have a role to play in formative events in ovule and embryo morphogenesis.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV43808.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011084050.10.0homeobox protein knotted-1-like LET12 isoform X2
SwissprotO223001e-164LET12_SOLLC; Homeobox protein knotted-1-like LET12
TrEMBLA0A2Z7CAA70.0A0A2Z7CAA7_9LAMI; Homeobox protein knotted-1-like 13
STRINGMigut.K00376.1.p0.0(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14322472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11060.11e-157KNOTTED1-like homeobox gene 4