PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44180.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family AP2
Protein Properties Length: 346aa    MW: 39056.2 Da    PI: 8.2809
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44180.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2409.8e-1343100156
         AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                 s y+GV++++++gr++A+++d  ++n  ++k+ + g ++ +e Aa a++ a++k++g+
  KZV44180.1  43 SVYRGVTRHRWTGRYEAHLWDkNCWNEsQNKKGRQGAYDDEEAAAHAYDLAALKYWGH 100
                 78*******************99998898888888********************997 PP
2AP251.32.9e-16142193155
         AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 s+y+GV +++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  KZV44180.1 142 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 193
                 89****99**********99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.9E-943100IPR001471AP2/ERF domain
SuperFamilySSF541712.22E-1543109IPR016177DNA-binding domain
PROSITE profilePS5103218.75544107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.7E-1344108IPR001471AP2/ERF domain
SMARTSM003801.9E-1944113IPR001471AP2/ERF domain
PRINTSPR003673.8E-64556IPR001471AP2/ERF domain
CDDcd000181.64E-23142203No hitNo description
SuperFamilySSF541719.81E-18142203IPR016177DNA-binding domain
PfamPF008475.3E-12142193IPR001471AP2/ERF domain
PROSITE profilePS5103218.334143201IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17143202IPR001471AP2/ERF domain
SMARTSM003801.8E-24143207IPR001471AP2/ERF domain
PRINTSPR003673.8E-6183203IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0045723Biological Processpositive regulation of fatty acid biosynthetic process
GO:1901959Biological Processpositive regulation of cutin biosynthetic process
GO:1904278Biological Processpositive regulation of wax biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0000981Molecular FunctionRNA polymerase II transcription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAKTSKQNLK SSPAVSKEIK GASPKAKRTR KSVPRESPQQ RSSVYRGVTR HRWTGRYEAH  60
LWDKNCWNES QNKKGRQGAY DDEEAAAHAY DLAALKYWGH DTILNFPLST YPQELKEMEG  120
QSKEEYIGSL RRKSSGFSRG VSKYRGVARH HHNGRWEARI GRVFGNKYLY LGTYATQEEA  180
ATAYDMAAIE YRGLNAVTNF DLSRYINVQP LMGNARANPN DKVDINKVHS PSQESGLAYL  240
NYGHEKSSSS AETTTGTPPY HCGSATAMSA LGILQQSSKF KEMLEQTATC DSPLSLSERD  300
VPPRSCFPDD IQTSFDFQDS SRFAEEHDVI FRDYDSFALP IYELDD
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44180.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051280.11e-169AP2-like ethylene-responsive transcription factor At1g16060 isoform X1
RefseqXP_028051281.11e-169AP2-like ethylene-responsive transcription factor At1g16060 isoform X2
SwissprotQ94AN41e-106AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A2Z7CAX80.0A0A2Z7CAX8_9LAMI; Uncharacterized protein
STRINGcassava4.1_025233m1e-160(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18152464
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.12e-97ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]