PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV44363.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 154aa MW: 17301.9 Da PI: 8.3824

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV44363.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	142.1	1.7e-44	14	113	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrr+Ca+dC +apyfpa++p+kfa vhk+FGasn+ k+l++lpe++r d +ss+vyeA+ar+rdPvyG+vg i++lqqq+e l+++lal+++ KZV44363.1 14 PCAACKLLRRRCAEDCLFAPYFPAAEPHKFASVHKVFGASNINKMLQDLPENQRGDFVSSMVYEANARVRDPVYGCVGAISSLQQQVEALQTQLALTQA 112 7**********************************************************************************************9997 PP DUF260 100 e 100 e KZV44363.1 113 E 113 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.757	13	114	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-44	14	111	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MKDKSCKKQG TVSPCAACKL LRRRCAEDCL FAPYFPAAEP HKFASVHKVF GASNINKMLQ 60 DLPENQRGDF VSSMVYEANA RVRDPVYGCV GAISSLQQQV EALQTQLALT QAEVMRMRLR 120 HFTWATVESP PSQPAKSFFS MDMVDHLDHS SFWA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-46	10	116	7	113	LOB family transfactor Ramosa2.1
5ly0_B	5e-46	10	116	7	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV44363.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002264049.2	3e-76	PREDICTED: LOB domain-containing protein 4
Swissprot	Q9SHE9	2e-58	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	A0A2Z7CCD1	1e-112	A0A2Z7CCD1_9LAMI; LOB domain-containing protein 4
STRING	VIT_19s0027g01120.t01	1e-75	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	9e-61	LOB domain-containing protein 4