PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV44471.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

YABBY

Protein Properties

Length: 144aa MW: 16091.2 Da PI: 10.5449

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV44471.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	173.2	1.7e-53	1	133	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirPPekr 122 v+vP +s+f++vtvrCGhC++llsvn+ q l ++ + +k++++++ ++ s+s+s++ + ++ p+ p irPPekr KZV44471.1 1 VNVPCSSSFNIVTVRCGHCANLLSVNVGALLQSLHLQDF----------QIQKQHSSHFGG---VKDIGSSSRSNMFAAFQAEQVQPKSTP-IRPPEKR 85 89************************99988877774..........223334444433...333333333333334556677777777.9** PP YABBY 123 qrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 qrvPsaynrfikeeiqrikasnP+ishreafs+aaknWahfP+ihfgl KZV44471.1 86 QRVPSAYNRFIKEEIQRIKASNPEISHREAFSTAAKNWAHFPHIHFGL 133 ********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	8.6E-58	1	133	IPR006780	YABBY protein
SuperFamily	SSF47095	1.11E-8	74	126	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	2.7E-5	80	127	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development
GO:0010158	Biological Process	abaxial cell fate specification

Sequence ? help Back to Top
Protein Sequence Length: 144 aa Download sequence Send to blast
VNVPCSSSFN IVTVRCGHCA NLLSVNVGAL LQSLHLQDFQ IQKQHSSHFG GVKDIGSSSR 60 SNMFAAFQAE QVQPKSTPIR PPEKRQRVPS AYNRFIKEEI QRIKASNPEI SHREAFSTAA 120 KNWAHFPHIH FGLKLETNSK QATN

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV44471.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011088989.1	1e-74	putative axial regulator YABBY 2 isoform X1
Refseq	XP_011088990.1	1e-74	putative axial regulator YABBY 2 isoform X1
Swissprot	Q9XFB0	3e-59	YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBL	A0A2Z7CBP8	1e-102	A0A2Z7CBP8_9LAMI; Axial regulator YABBY 2 (Fragment)
STRING	VIT_06s0009g00880.t01	6e-69	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA381	24	163

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	1e-61	YABBY family protein

Publications ? help Back to Top
Sacharowski SP, et al. SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development. Plant Cell, 2015. 27(7): p. 1889-906 [PMID:26106148]