PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV44526.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

C2H2

Protein Properties

Length: 166aa MW: 19250.8 Da PI: 8.2246

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV44526.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.8	0.00036	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C k+F + + ++H +++ KZV44526.1 69 FRCRKCAKPFAVRGDWRTHEKNC 91 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.8E-5	55	89	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.7E-4	55	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding

Sequence ? help Back to Top
Protein Sequence Length: 166 aa Download sequence Send to blast
MHMWGHGSEF RKGPESLRGT KPASPFPRMP CYCCAEGCKN NIDHPRSKPL KDFRTLQTHY 60 KRKHGTKPFR CRKCAKPFAV RGDWRTHEKN CGKLWFCICG SDFKHKRSLK DHVRAFGEGH 120 AAHSKNLYPY DQVDVEEFEE EEEEDEHGEE FRIFECIGNG GFGGLC

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator (Probable). Involved in leaf vasculature patterning (PubMed:18643975). {ECO:0000269\|PubMed:18643975, ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV44526.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011077223.1	3e-88	zinc finger protein WIP6
Swissprot	Q9FX68	1e-78	ZWIP6_ARATH; Zinc finger protein WIP6
TrEMBL	A0A2Z7B8E0	1e-121	A0A2Z7B8E0_9LAMI; Uncharacterized protein
STRING	Migut.L01093.1.p	2e-82	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA462	24	133

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13290.1	2e-80	C2H2-like zinc finger protein