PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44617.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family LBD
Protein Properties Length: 217aa    MW: 23872.4 Da    PI: 4.8632
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44617.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260134.54.1e-42541531100
      DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 
                 +CaaCk+lrr+C+++C+lapyfp +qp kf ++h++FGasn++kll++lpe +r da++s+vyeA+ar+rdPvyG++g i +lq+q+++l+ ela++++
  KZV44617.1  54 PCAACKILRRRCVENCILAPYFPPDQPLKFTIAHRVFGASNIIKLLRDLPEAQRADAVTSMVYEANARLRDPVYGCAGSICQLQKQISELQGELAKAQA 152
                 7***********************************************************************************************998 PP

      DUF260 100 e 100
                 e
  KZV44617.1 153 E 153
                 7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089126.41753154IPR004883Lateral organ boundaries, LOB
PfamPF031952.1E-4254151IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MEYTENTTSP TAAVVPVAVA ATEGYPSSLS PTPSPLSPVA AAASPPPTHV ILSPCAACKI  60
LRRRCVENCI LAPYFPPDQP LKFTIAHRVF GASNIIKLLR DLPEAQRADA VTSMVYEANA  120
RLRDPVYGCA GSICQLQKQI SELQGELAKA QAEIMNMQCQ NAKLFEMICK KMGTQDDLDQ  180
ETKHFTHELM FPYDDISNSP FFLDENILGV AWEPLWT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A3e-425315910116LOB family transfactor Ramosa2.1
5ly0_B3e-425315910116LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44617.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012834486.16e-85PREDICTED: LOB domain-containing protein 1-like
SwissprotQ9LQR05e-67LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A2Z7CFH21e-161A0A2Z7CFH2_9LAMI; Uncharacterized protein
STRINGMigut.F02029.1.p2e-86(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.11e-68LOB domain-containing protein 1