PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44789.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family SBP
Protein Properties Length: 545aa    MW: 59309.4 Da    PI: 9.6879
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44789.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP135.41.7e-4258134177
                 --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS
         SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 
                 +CqvegC+adls+ak y+ rh+vC +hsk p+v+v+g+eqrfCqqCsrfh+l efDe krsCrrrLa+hnerrrk+ 
  KZV44789.1  58 ICQVEGCNADLSDAKAYYLRHRVCGMHSKFPKVIVAGIEQRFCQQCSRFHQLPEFDEVKRSCRRRLAGHNERRRKPP 134
                 5**************************************************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.8E-3453120IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.03556133IPR004333Transcription factor, SBP-box
SuperFamilySSF1036121.57E-4057137IPR004333Transcription factor, SBP-box
PfamPF031103.5E-3259132IPR004333Transcription factor, SBP-box
PfamPF024662.5E-13405515IPR003397Mitochondrial inner membrane translocase subunit Tim17/Tim22/Tim23/peroxisomal protein PMP24
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005747Cellular Componentmitochondrial respiratory chain complex I
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 545 aa     Download sequence    Send to blast
MERGSSSSFS TAAGADSLIN GLNFGNKIYL EGVSSVQPKS GGGQSARRGR SGALQPPICQ  60
VEGCNADLSD AKAYYLRHRV CGMHSKFPKV IVAGIEQRFC QQCSRFHQLP EFDEVKRSCR  120
RRLAGHNERR RKPPPRSLLP PRFGTLPPSI FGIPDNRAKT GGFVMKSSTY PLCSIIAEPG  180
LGNQAMITEK HQPPWKSNSH NSLPDLLQGS SSPTVCSAAS LVSPEECFGV VSDSSSALSL  240
LSSHPWSSRN QSPSPDMNVF RTPTPTPNQT AIGQFPFPSW DFRNGEANEM RHDLGSVQLP  300
HRVIVSTMQS LDCVNRPRID FMYSSSPGDM ILLSSTCTGP FELLSQTTSN QVYTEIKIYY  360
SVAVTKNMRN ENQGQMKKGK WQVTAIAMDP SELRQMEDEE SPTMKTIKGA TFGLVTGTIW  420
GTVVATWQDV PRVERSVALP GLIRTLKMMG NHGLTFAAIG GVYIGVEQLV QNYRMKRDFV  480
NGAVGGFVAG ASILGYKGKS ISTAISAGAA LAATSSFIDI GGQTTRVDTG KEYYPYTTKK  540
RPNVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A3e-3349132184squamosa promoter binding protein-like 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44789.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078846.11e-94squamosa promoter-binding-like protein 17 isoform X1
TrEMBLA0A2Z7CJD90.0A0A2Z7CJD9_9LAMI; Outer envelope pore protein 16-3, chloroplastic/mitochondrial-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42200.12e-36squamosa promoter binding protein-like 9