PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV44968.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 256aa    MW: 26739.3 Da    PI: 8.6579
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV44968.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH26.89.2e-096186227
                -S---SGGGGTS--TTTTT-SS-SSS CS
     zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
                kt +C++f     Ck+Gd+C+FaHg+
  KZV44968.1 61 KTQICNRFNSAEGCKFGDKCNFAHGE 86
                899*********************96 PP
2zf-CCCH38.61.8e-12223247126
                 --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                 ykt+lC +f++ G C +GdrC+FaHg
  KZV44968.1 223 YKTKLCENFSK-GSCTFGDRCHFAHG 247
                 9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501038.606125IPR000571Zinc finger, CCCH-type
SMARTSM0035648224IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-4722IPR000571Zinc finger, CCCH-type
PfamPF146080.571222No hitNo description
SuperFamilySSF902291.07E-75990IPR000571Zinc finger, CCCH-type
SMARTSM003560.00135986IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.9295987IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-126090IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-66186IPR000571Zinc finger, CCCH-type
SMARTSM003226.3E-13127197IPR004087K Homology domain
Gene3DG3DSA:3.30.1370.101.6E-17128196IPR004088K Homology domain, type 1
PROSITE profilePS5008415.074128192IPR004088K Homology domain, type 1
SuperFamilySSF547917.74E-16129206IPR004088K Homology domain, type 1
CDDcd001053.02E-15130192No hitNo description
PfamPF000136.8E-13130194IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.102.2E-17217253IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.41E-9221252IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-7222248IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.868222249IPR000571Zinc finger, CCCH-type
PfamPF006428.6E-10223247IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLFASSFSSS GCPFGDNCHF LHYFPGGYKA VAQMMNLVPP VNRTMAGPPA SQNGSAPAGV  60
KTQICNRFNS AEGCKFGDKC NFAHGEWELG KPIIPSHEDP RAVGAIAGRF NAPMEPLVPG  120
PAASFGVSAT AKISVDASLV GAIIGKGGVN SKQICRQTGA KLAIRDHETN PNLRNIELEG  180
TFEQIQQAST MVREIIVTVS SGNGSVKAIG APGGGPPTPG SNYKTKLCEN FSKGSCTFGD  240
RCHFAHGAAE LRKTGQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV44968.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011078827.11e-139zinc finger CCCH domain-containing protein 14-like
SwissprotQ69XQ31e-94C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A2Z7CDF80.0A0A2Z7CDF8_9LAMI; Uncharacterized protein
STRINGcassava4.1_013023m1e-135(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.11e-67C3H family protein