PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45433.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family GRAS
Protein Properties Length: 216aa    MW: 24986.7 Da    PI: 4.227
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45433.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS113.52.7e-351198172374
        GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                 +g+p+ +++ v+++++d++  +++++++E++ V  ++ l + l  + sl++    ++k++k+l P ++vv e ea +++ +F +rf  +l y +++fd+
  KZV45433.1   1 MGLPLLYKP-VVSEFKDVREASFDLETDEVVTVYASVCLWTQLVTPSSLND----FMKCIKELDPSLMVVNEYEACTDTLNFIDRFYGSLIYAMTVFDC 94 
                 689999***.7999***********************99999977777777....******************************************** PP

        GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLv 368
                 le+ l  +    + +E++ l+  i+n++++e +er+  h +   Wr+ + e+ + +++ls+    qaklll+  + ++  +++ e ++l+ gWk+ pL 
  KZV45433.1  95 LENCLKGDPLYWKIIEEF-LRGVIRNIITAEDEERIYWHAKIDFWRNLFAEFDMMEMELSDVCKYQAKLLLKSNSsWNNCTLDMEGKCLIVGWKGTPLQ 192
                 ****98888888899988.9*******************************************************8899******************** PP

        GRAS 369 svSaWr 374
                 s+SaW+
  KZV45433.1 193 SISAWK 198
                 *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098513.3161177IPR005202Transcription factor GRAS
PfamPF035149.4E-331198IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGLPLLYKPV VSEFKDVREA SFDLETDEVV TVYASVCLWT QLVTPSSLND FMKCIKELDP  60
SLMVVNEYEA CTDTLNFIDR FYGSLIYAMT VFDCLENCLK GDPLYWKIIE EFLRGVIRNI  120
ITAEDEERIY WHAKIDFWRN LFAEFDMMEM ELSDVCKYQA KLLLKSNSSW NNCTLDMEGK  180
CLIVGWKGTP LQSISAWKIN QIGNSEQQDD SPTVKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-121198174375GRAS family transcription factor containing protein, expressed
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45433.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011071651.19e-81DELLA protein RGL1-like
TrEMBLA0A2Z7CFG11e-159A0A2Z7CFG1_9LAMI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46941842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.15e-25RGA-like 1