PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45606.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family CO-like
Protein Properties Length: 356aa    MW: 40441.2 Da    PI: 6.3141
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45606.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.93.2e-061758439
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                r C+++ +   + +C+ +  +lC +C   +H        H++
  KZV45606.1 17 RACDTCRSAACTVYCRADMAYLCGSCDARIHAAnllasrHER 58
                57******99*********************65677777765 PP
2zf-B_box29.61.5e-0959104342
    zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                  ++C+ +e+ ++ + C+ +   lC +C + +H+       H +vp+
  KZV45606.1  59 VWVCEACERAPAAFLCNADAASLCTSCDSDIHSAnplarrHHRVPI 104
                 689*****************************66899999877775 PP
3CCT66.48e-23287330144
         CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                 Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k+ 
  KZV45606.1 287 REARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRR 330
                 9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.3E-91461IPR000315B-box-type zinc finger
PROSITE profilePS501199.6271461IPR000315B-box-type zinc finger
CDDcd000214.00E-71761No hitNo description
PROSITE profilePS5011911.00757104IPR000315B-box-type zinc finger
PfamPF006431.2E-758104IPR000315B-box-type zinc finger
CDDcd000211.49E-760104No hitNo description
SMARTSM003365.5E-862104IPR000315B-box-type zinc finger
PfamPF062031.1E-16287329IPR010402CCT domain
PROSITE profilePS5101716.569287329IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MLKLEKHGGD GPHTWARACD TCRSAACTVY CRADMAYLCG SCDARIHAAN LLASRHERVW  60
VCEACERAPA AFLCNADAAS LCTSCDSDIH SANPLARRHH RVPILPIRGF LYGPPAPRPG  120
DAAVEDDLLT QEGDDADEED EDEAASWLLL NPSKNRDNQS NEIEGLFGEE VDEYFDLDDY  180
NPCQNNQFND QYNTTQQNYS TVSQRNHGDS VVPIQNCKEK DNLFQMGFEC KATNLGFPFR  240
RWMLAWFRSQ QRRSSQSPTQ DLRKGTIDLF SGPPIQAPAL QLTPMDREAR VLRYREKKKA  300
RKFEKTIRYA SRKAYAETRP RIKGRFAKRR DVEVEVDQMF STSLMAETGY GMVPSY
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45606.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007032965.21e-151PREDICTED: zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-115COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLA0A2Z7CLD30.0A0A2Z7CLD3_9LAMI; Zinc finger protein CONSTANS-LIKE 2
STRINGEOY038911e-150(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52482337
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-113CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]