PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

KZV45680.1

Organism

Dorcoceras hygrometricum

Taxonomic ID

472368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras

Family

LBD

Protein Properties

Length: 128aa MW: 14144.8 Da PI: 6.7912

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
KZV45680.1	genome	CNU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	79.6	5.2e-25	10	85	24	99
DUF260 24 aeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +e+p kfan+hk+FGasn +kll+++p+++reda++sl+yeA+ar++d vyG+vg i+ lq+q+ +l+ e++++++ KZV45680.1 10 SEEPTKFANAHKIFGASNFSKLLNEIPPHQREDAVNSLAYEADARLKDQVYGCVGAISVLQRQVVHLQREVDAVNA 85 57899*****************************************************************999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	15.368	1	87	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.1E-24	10	84	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 128 aa Download sequence Send to blast
MISVWWKSTS EEPTKFANAH KIFGASNFSK LLNEIPPHQR EDAVNSLAYE ADARLKDQVY 60 GCVGAISVLQ RQVVHLQREV DAVNADLMRY TKGVGGSTSS DSKMGIRVTY PYQYWITNNT 120 GTGGDDGS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	10	100	34	125	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	10	100	34	125	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	KZV45680.1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011097516.1	6e-48	LOB domain-containing protein 25-like
Swissprot	Q8L8Q3	1e-46	LBD25_ARATH; LOB domain-containing protein 25
TrEMBL	A0A2Z7CF72	8e-92	A0A2Z7CF72_9LAMI; LOB domain-containing protein 25-like
STRING	Cagra.5575s0004.1.p	1e-45	(Capsella grandiflora)
STRING	XP_008458801.1	3e-45	(Cucumis melo)
STRING	XP_004142848.1	3e-45	(Cucumis sativus)
STRING	XP_009766717.1	3e-45	(Nicotiana sylvestris)
STRING	XP_006292048.1	1e-45	(Capsella rubella)
STRING	XP_010425543.1	1e-45	(Camelina sativa)
STRING	XP_010502770.1	1e-45	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G27650.1	5e-49	LOB domain-containing protein 25

Publications ? help Back to Top
Kim M,Kim MJ,Pandey S,Kim J Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development. Plant Cell Physiol., 2016. 57(11): p. 2291-2299 [PMID:27519310]