PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45807.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family C3H
Protein Properties Length: 154aa    MW: 18492.1 Da    PI: 7.7387
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45807.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH201.2e-0689109526
                 --SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                 lC+++   G C +Gd+C FaHg
  KZV45807.1  89 LCPDHKD-GMCLRGDSCVFAHG 109
                 7888888.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010311.47984111IPR000571Zinc finger, CCCH-type
SMARTSM003560.005984110IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.55E-585113IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-589112IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-4116147IPR000571Zinc finger, CCCH-type
SMARTSM0035621119142IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MLLQMNGNKE FDVPSLTLKE SSGLELTHDD FHDLLDEALY ESDDFRMYGY KVTRCPRRYR  60
HNWMSCPFMH FGEKARRRDP RLYNYVGILC PDHKDGMCLR GDSCVFAHGA FEHWLHPDKY  120
RTRMCNARAF CSRRVCFFAH SVQELRQETC YPWY
Functional Description ? help Back to Top
Source Description
UniProtEmbryo-specific transcription factor required at the globular to heart stage transition in embryo development. {ECO:0000269|PubMed:9501112}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45807.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016574326.15e-57PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotO650363e-48C3H54_ARATH; Zinc finger CCCH domain-containing protein 54
TrEMBLA0A2Z7CIQ91e-112A0A2Z7CIQ9_9LAMI; CCCH zinc finger protein
STRINGPGSC0003DMT4000975382e-53(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA717133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07500.11e-50C3H family protein