PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KZV45826.1
Organism
Dorcoceras hygrometricum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Gesneriaceae; Didymocarpoideae; Trichosporeae; Loxocarpinae; Dorcoceras
Family DBB
Protein Properties Length: 196aa    MW: 21525.8 Da    PI: 6.8192
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KZV45826.1genomeCNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.64e-06546439
    zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.......Htv 39
                  C+ +e  e++l C  ++  lC  C ++ H         H++
  KZV45826.1  5 IQCSVCEAAEANLLCCADEAALCWACDEKVH-TvnklvskHQR 46
                57******99*******************99.33556666665 PP
2zf-B_box24.27e-085588235
    zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHk 35
                +++kC+ ++e    +fC +++ l+C++C l+ H 
  KZV45826.1 55 QMPKCDICQETTGFFFCLEDRALFCRKCDLAVHT 88
                799*******999******************993 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.082249IPR000315B-box-type zinc finger
SMARTSM003361.8E-12249IPR000315B-box-type zinc finger
CDDcd000219.39E-6549No hitNo description
PROSITE profilePS501199.05854101IPR000315B-box-type zinc finger
SMARTSM003367.9E-1554101IPR000315B-box-type zinc finger
PfamPF006435.5E-65597IPR000315B-box-type zinc finger
CDDcd000211.20E-757101No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MKMKIQCSVC EAAEANLLCC ADEAALCWAC DEKVHTVNKL VSKHQRILLS SSQAQMPKCD  60
ICQETTGFFF CLEDRALFCR KCDLAVHTVN SFVSKHQRFL LTGVKLGTEA IGHCPFQSSD  120
KTKSREKVSG PELSLQMRTI PVQVGIDVDA PHSKPAVPCG SATEGMSPWQ LDEFIGLGEL  180
NQNHNFMDSG SSKVCL
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis and light-regulated inhibition of hypocotyl elongation, independently and in concert with HY5 and BBX21 (PubMed:18540109, PubMed:18796637, PubMed:18182030, PubMed:21427283). Acts as a positive regulator of de-etiolation and influences chloroplast biogenesis and function through regulation of genes encoding chloroplast proteins (PubMed:18182030). Acts downstream of COP1 and plays an important role in early and long-term adjustment of the shade avoidance syndrome (SAS) responses in natural environments (PubMed:21070414). Regulates the expression of genes responsive to light hormone signals which may contribute to optimal seedling development (PubMed:21427283). {ECO:0000269|PubMed:18182030, ECO:0000269|PubMed:18540109, ECO:0000269|PubMed:18796637, ECO:0000269|PubMed:21070414, ECO:0000269|PubMed:21427283}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapKZV45826.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By light. {ECO:0000269|PubMed:18182030}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011098187.14e-82B-box zinc finger protein 22
SwissprotQ9SYM21e-64BBX22_ARATH; B-box zinc finger protein 22
TrEMBLA0A2Z7CM181e-143A0A2Z7CM18_9LAMI; B-box zinc finger protein 22
STRINGSolyc07g062160.2.12e-75(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28922346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.15e-45light-regulated zinc finger protein 1